STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Versioned source-reviewed overlay · Phase 6B

Experimental Bioactivity

Primary-source observations, original endpoints, explicit target/construct scope and documented gaps. Phase 5 and Phase 6A remain frozen.

All compound classifications
13additional observed outcomes
12new source preparations
2NSD2 PWWP1 competition observations
150independently triaged source candidates (not validated binders)
Assay, construct, verification, source and structural status

All filter predicates must match one observation. Only an exact quantitative endpoint may be filtered by concentration. Units are normalized for filtering without altering the source result.

4 matching observations · 3 preparations

Phase 6B additions only; Phase 6A's baseline 80 remain separately accessible.

PreparationTarget and scopeMethod and original endpointSource and verificationStructure / limitations
UNC10088published name only exact assayed identity unresolvedNSD2 PWWP1 — exact domainHis-tagged NSD2 PWWP1; exact sequence boundaries not independently extractedTR-FRET competitive displacement of biotinylated UNC7096
IC50 =248 ± 22 nMSEM · n=3 independent experiments
10.1038/s41467-026-72235-9Figure 2h and Supplementary Figure 3Daccepted with bounded interpretationTransformed compound in ternary complex — not unmodified parent binary
Interpretation and limitations

positive competitive engagement; not an equilibrium Kd

The prepared chemical parent is not stereochemistry/batch resolved; IC50 not Kd. Do not count FBXO22-conditional results as independent chemical identities.

Without FBXO22 FIST domain

UNC10088published name only exact assayed identity unresolvedNSD2 PWWP1 — exact domainHis-tagged NSD2 PWWP1 + FBXO22 FIST; exact sequence boundaries not independently extractedTR-FRET competitive displacement of biotinylated UNC7096
IC50 =101 ± 8 nMSEM · n=3 independent experiments
10.1038/s41467-026-72235-9Figure 2h, Supplementary Figure 3D and Resultsaccepted with bounded interpretationTransformed compound in ternary complex — not unmodified parent binary
Interpretation and limitations

positive cooperative engagement in a ternary context; not an equilibrium Kd

Two different experimental contexts for one preparation; do not average or replace one with another.

With wild-type FBXO22 FIST domain; source-reported cooperative factor alpha = 3.3, not 248/101

UNC10415667published name only exact assayed identity unresolvedNSD2 — cellular, whole proteinU2OS NSD2-HiBiT cellsCellular HiBiT protein-degradation dose response
DC50 =460 nMfigure caption reports SEM but numeric uncertainty was not independently extracted · n=2 independent experiments (final 2026 article)
10.1038/s41467-026-72235-9Figure 3e legend and Resultsaccepted with bounded interpretationTransformed compound in ternary complex — not unmodified parent binary
Interpretation and limitations

cellular whole-protein depletion; no isolated-domain affinity

Do not copy this whole-protein DC50 to NSD2 PWWP1. 75% at 1 µM for 6 hours is a separate endpoint, not the same dose-response value.

U2OS NSD2 HiBiT dose response

UNC12149published name only exact assayed identity unresolvedNSD2 — cellular, whole proteinU2OS NSD2-HiBiT cellsCellular HiBiT protein-degradation dose response
DC50 =120 nMfigure caption reports SEM but numeric uncertainty was not independently extracted · n=2 independent experiments (final 2026 article)
10.1038/s41467-026-72235-9Figure 4h legend and Resultsaccepted with bounded interpretationNo verified PWWP-bound experimental binary structure
Interpretation and limitations

cellular whole-protein depletion; no isolated-domain affinity

Do not transfer cellular DC50 to a particular PWWP-domain biochemical binding constant.

U2OS NSD2 HiBiT dose response

Download complete Phase 6B accepted-observation CSV · Full original source-decision ledger