STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Questions that the curated evidence can expose

Research-gap explorer

Find missing coordinates, structure-free bioactivity, incomplete assay context and unresolved evolutionary relationships.

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42 domain records

Trypanosoma brucei brucei (strain 927/4 GUTat10.1)

28H13_90 PWWP1

1 observed-core PDB entries · 2 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

62 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

ARID4A PWWP1

3 observed-core PDB entries · 3 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

24 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

ARID4B PWWP1

0 observed-core PDB entries · 4 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

93 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

BRD1 PWWP1

3 observed-core PDB entries · 2 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 1 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • structures without curated bioactivity
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

2 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

BRPF1 PWWP1

7 observed-core PDB entries · 4 predicted model records · 1 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 1 earlier studied small-molecule profiles · 4 other PDB components

  • bioactivity without bound structure
  • assay construct unresolved
  • assay method unresolved
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

BRPF3 PWWP1

1 observed-core PDB entries · 3 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 1 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • no curated compound evidence
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

DNMT3A PWWP1

14 observed-core PDB entries · 3 predicted model records · 1 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 4 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • structures without curated bioactivity
  • assay construct unresolved
  • observed core missing heavy atoms
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

5 assessed chain/domain records have missing heavy atoms. Entries: 11OA.

Homo sapiens

DNMT3B PWWP1

14 observed-core PDB entries · 8 predicted model records · 2 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 1 earlier studied small-molecule profiles · 4 other PDB components

  • bioactivity without bound structure
  • assay construct unresolved
  • assay method unresolved
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Mus musculus

Dnmt3b PWWP1

1 observed-core PDB entries · 4 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

59 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

GLYR1 PWWP1

0 observed-core PDB entries · 5 predicted model records · 1 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 1 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • bioactivity without bound structure
  • assay construct unresolved
  • assay method unresolved
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

59 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

HDGF PWWP1

2 observed-core PDB entries · 3 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

HDGFL1 PWWP1

0 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

52 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

HDGFL2 PWWP1

86 observed-core PDB entries · 4 predicted model records · 7 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 2 earlier studied small-molecule profiles · 5 other PDB components

  • bioactivity without bound structure
  • unresolved chemical identity
  • assay construct unresolved
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

HDGFL3 PWWP1

5 observed-core PDB entries · 1 predicted model records · 1 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 1 earlier studied small-molecule profiles · 4 other PDB components

  • deposited components not research ligands
  • bioactivity without bound structure
  • assay construct unresolved
  • assay method unresolved
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Rattus norvegicus

Hdgf PWWP1

3 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 1 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

58 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Mus musculus

Hdgfl3 PWWP1

1 observed-core PDB entries · 2 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

58 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

IOC4 PWWP1

1 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

151 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

JMJD1C PWWP1

0 observed-core PDB entries · 3 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • predicted candidate excluded from tree

99 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Drosophila melanogaster

Jasper PWWP1

4 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 1 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • structures without curated bioactivity
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

52 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

KDM3A PWWP1

0 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • predicted candidate excluded from tree

90 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

KDM3B PWWP1

0 observed-core PDB entries · 3 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • predicted candidate excluded from tree

99 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

MBD5 PWWP1

0 observed-core PDB entries · 2 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

25 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

MSH6 PWWP1

2 observed-core PDB entries · 4 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 2 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • no curated compound evidence
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

NSD1 PWWP1

0 observed-core PDB entries · 3 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

66 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

NSD1 PWWP2

0 observed-core PDB entries · 3 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

63 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

NSD2 PWWP1

19 observed-core PDB entries · 7 predicted model records · 34 Phase 5/6A domain observations + 2 Phase 6B exact-domain source observations · 17 earlier studied small-molecule profiles · 5 other PDB components

  • bioactivity without bound structure
  • unresolved chemical identity
  • assay construct unresolved
  • observed core missing heavy atoms
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

3 assessed chain/domain records have missing heavy atoms. Entries: 6XCG.

Homo sapiens

NSD2 PWWP2

0 observed-core PDB entries · 7 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 1 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

63 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

NSD3 PWWP1

11 observed-core PDB entries · 5 predicted model records · 13 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 11 earlier studied small-molecule profiles · 1 other PDB components

  • bioactivity without bound structure
  • unresolved chemical identity
  • assay construct unresolved
  • source conflict
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

NSD3 PWWP2

2 observed-core PDB entries · 5 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 1 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • no curated compound evidence
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

PSIP1 PWWP1

13 observed-core PDB entries · 3 predicted model records · 2 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 1 earlier studied small-molecule profiles · 4 other PDB components

  • deposited components not research ligands
  • bioactivity without bound structure
  • unresolved chemical identity
  • assay construct unresolved
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

3 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

PWWP2A PWWP1

0 observed-core PDB entries · 3 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

61 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

PWWP2B PWWP1

1 observed-core PDB entries · 2 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 1 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

2 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

PWWP3A PWWP1

1 observed-core PDB entries · 3 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 2 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

3 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

PWWP3B PWWP1

0 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

62 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

PWWP4 PWWP1

0 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

62 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

ZCWPW1 PWWP1

0 observed-core PDB entries · 5 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

67 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

ZCWPW2 PWWP1

0 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no experimental coordinates
  • prediction without coordinates
  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

65 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

ZMYND11 PWWP1

1 observed-core PDB entries · 6 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Homo sapiens

ZMYND8 PWWP1

5 observed-core PDB entries · 23 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 4 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • no curated compound evidence
  • all atom completeness unassessed
  • deep phylogeny unresolved

0 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Mus musculus

Zmynd11 PWWP1

3 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 2 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • deposited components not research ligands
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

52 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843)

pdp1 PWWP1

1 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

63 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843)

pdp2 PWWP1

1 observed-core PDB entries · 1 predicted model records · 0 Phase 5/6A domain observations + 0 Phase 6B exact-domain source observations · 0 earlier studied small-molecule profiles · 0 other PDB components

  • no curated domain bioactivity
  • no source curated studied small molecules
  • no curated compound evidence
  • all atom completeness unassessed
  • residues without curated pairwise structural correspondence
  • deep phylogeny unresolved

65 annotated positions lack a retained pairwise structural correspondence. This concerns representative-core comparisons, not all experimental coordinates.

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