Native domain record

Zmynd11 PWWP1

Zinc finger MYND domain-containing protein 11

Q8R5C8 at UniProt

Mus musculus602 amino acidsannotation supportedUP:Q8R5C8:PWWP1

1annotated core in Zmynd11

3PDB entries with observed PWWP1 coordinates

1model records for PWWP1

0frozen v1.2 assay / association records for PWWP1

Canonical sequence · Source-mapped regions

Protein domain architecture

602 residues

PWWP annotation cores, other annotated regions, and deposited construct mappings share the canonical amino acid axis. The original Atlas PWWP intervals retain their source definitions.

PWWP annotation coreOther source annotationPredicted candidate, when present

4 additional source-supported regions · coordinates and evidence

UniProt feature coordinates accepted after exact canonical sequence identity check against the frozen Atlas. Source annotations can be inferred by sequence or curated from experiments; evidence codes remain attached. Other domain types link to their UniProt source because the Atlas records PWWP domains.

Source feature	Type	Amino acids	Evidence
SAMD1-like winged helix (WH)	Domain	6–82	ECO:0000255 PROSITE-ProRule: PRU01358
PHD-type	Zinc finger	100–148	ECO:0000255 PROSITE-ProRule: PRU00146
Bromo	Domain	149–255	ECO:0000255 PROSITE-ProRule: PRU00035
MYND-type	Zinc finger	563–598	ECO:0000255 PROSITE-ProRule: PRU00134

Deposited construct mapping

1 selected example

Colored segments map deposited polymer sequences to this canonical protein; dark segments have observed coordinates. Unmapped tags and engineered residues are not assigned canonical positions. These are not certified whole-fold boundaries.

4N4Gchain A154–371

Mapping and construct evidence

Deposited polymer length: 252 residues. Mapped sequence identity: 100.0%. sequence differences or tags detected; biological versus engineered origin requires review.

PWWP1: 52 / 52 annotation-core Cα residues observed.

Frozen SIFTS aligned regions with construct-to-UniProt sequence comparison. Bars are mapped canonical segments; tags, insertions, and unmapped termini are not assigned canonical positions. PDB source.

Unmapped construct positions: 1–34.

One mapped example per native domain, preferring frozen experimental representatives; up to four distinct mapped intervals.

Validated isoform differences · 0 PWWP correspondence records

Only source-validated PWWP core correspondences from the frozen v1.2 isoform audit; other-domain architectures are not projected onto isoforms. Coordinates in the isoform column refer to the individual isoform sequence; deleted cores remain absent.

No source-validated alternative-isoform core mapping is available in this snapshot.

Viewing Zmynd11 PWWP1

Canonical annotation interval 280–331 · UniProtKB DOMAIN. annotation core; not a certified complete folded domain or pocket.

Alternative PWWP annotations and interval provenance

No alternative annotation record is available in this snapshot.

PWWP1 · source-classified Phase 6A evidence

Ligands & Bioactivity

Explore all domain compounds →

0 chemical or preparation profiles · 0 domain-attributed assay / association observations. Counts refer to the curated snapshot.

0 profiles

Deposited research ligands

No records in this category for the selected domain in the curated snapshot.

0 profiles

Studied without research structure

No records in this category for the selected domain in the curated snapshot.

0 profiles

Experiment-specific controls

No records in this category for the selected domain in the curated snapshot.

0 profiles

Ambiguous / indirect evidence

No records in this category for the selected domain in the curated snapshot.

1 other deposited components in this domain (not pharmacological ligands)

Buffers, ions, cryoprotectants and solvents remain recorded as deposited chemical components.

PHOSPHATE ION · Other PDB component · not a studied ligand

Open this domain in Structural & Binding Landscape →

PWWP1 · Deposited coordinates

Experimental coverage and AlphaFold correspondence

3 entry / domain records

One representative chain per PDB entry and native domain. RMSD uses fixed UniProt correspondence and all common Cα atoms; it is reported only for ≥40 atoms and ≥80% core coverage. A value is descriptive, not a prediction benchmark.

PDB	Chain	Observed core Cα	Class	Method / resolution	AF RMSD Å	Review
4N4G	A	52 / 52	APO	X-RAY DIFFRACTION 1.947 Å	0.375	No classification flag
4N4H	A	52 / 52	Complexes	X-RAY DIFFRACTION 2.302 Å	0.507	No classification flag
4N4I	A	52 / 52	Complexes	X-RAY DIFFRACTION 1.999 Å	0.514	No classification flag

PWWP1 · Measured preparations

Frozen v1.2 assay records

Explore evidence links

This retained table is the original source projection. The Phase 5 Ligands & Bioactivity section above includes added observations and reviewed target context. Values remain attached to their assay, construct and preparation. A crystal structure does not transfer affinity to another construct or stereoisomer. Assay pages preserve field-level source-verification states where reviewed; unreviewed null fields remain uncurated.

Preparation / identity	Assay and result	Construct	Evidence and source
No curated assay row for this domain. This does not establish that no literature evidence exists.

Scientific review queue

PWWP1 · Prediction evidence

Predicted models

1 model records

Domain retention uses independently reconstructed UniProt isoform edits. Local pLDDT is not experimental confirmation and does not establish interdomain orientation.

Model	Origin	Core retention	Core mean pLDDT	Full mean pLDDT	Cautions
AF-Q8R5C8-F1:v6 Canonical	GDM	complete	96.6	82.3

PWWP1 · Structural correspondence

Human annotation-core comparisons

0 pairs

Structural alignment establishes a residue correspondence for these cropped cores. It does not establish equivalent ligand pockets, function or selectivity.

Domain pair	Aligned Cα	US-align RMSD Å	TM score A / B	View
No eligible experimental representative for a cross-domain comparison.