STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Phase 6D · Source-verified experimental structures

Comparative binding sites

Compare original deposited PWWP recognition environments across protein domains. Source-qualified ligand instances, evolutionary residue correspondence, local geometry and biochemical evidence retain separate meanings.

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283Calculated deposited research-ligand instances
254Strict within-entry observation groups
49Qualified geometric archetypes
11617Qualified representative comparisons

39 evolutionary instances · 18 experimental representatives

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All source-qualified ligand instances

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78 matching deposited instances; results are separated by experimental chain and exact ligand instance. Select a site to inspect original coordinates, mapped residues, local chemistry and geometric limitations.

DepositionMapped PWWP domainDeposited ligandLocal 5 Å contactsCore qualityArchetypeDetail
29HG · BUP:O96028:PWWP1A1J20140 incomplete side chainsARC-25306afd97d7Inspect evidence
29HH · BUP:O96028:PWWP1A1J20120 incomplete side chainsARC-3b84ce4c8506Inspect evidence
29HI · BUP:O96028:PWWP1A1J21150 incomplete side chainsARC-3b84ce4c8506Inspect evidence
6UE6 · CUP:O96028:PWWP1Q5D140 incomplete side chainsARC-3b84ce4c8506Inspect evidence
6UE6 · DUP:O96028:PWWP1Q5D40 incomplete side chainsUnqualifiedInspect evidence
6UE6 · AUP:O96028:PWWP1Q5D140 incomplete side chainsUnqualifiedInspect evidence
6UE6 · BUP:O96028:PWWP1Q5D40 incomplete side chainsUnqualifiedInspect evidence
6UE6 · AUP:O96028:PWWP1Q5D51 incomplete side chainsUnqualifiedInspect evidence
6UE6 · DUP:O96028:PWWP1Q5D140 incomplete side chainsUnqualifiedInspect evidence
6UE6 · EUP:O96028:PWWP1Q5D50 incomplete side chainsUnqualifiedInspect evidence
6UE6 · HUP:O96028:PWWP1Q5D130 incomplete side chainsUnqualifiedInspect evidence
6UE6 · EUP:O96028:PWWP1Q5D130 incomplete side chainsUnqualifiedInspect evidence
6UE6 · FUP:O96028:PWWP1Q5D50 incomplete side chainsUnqualifiedInspect evidence
6UE6 · BUP:O96028:PWWP1Q5D140 incomplete side chainsUnqualifiedInspect evidence
6UE6 · CUP:O96028:PWWP1Q5D50 incomplete side chainsUnqualifiedInspect evidence
6UE6 · FUP:O96028:PWWP1Q5D140 incomplete side chainsARC-3b84ce4c8506Inspect evidence
6UE6 · GUP:O96028:PWWP1Q5D50 incomplete side chainsUnqualifiedInspect evidence
6UE6 · GUP:O96028:PWWP1Q5D140 incomplete side chainsUnqualifiedInspect evidence
6UE6 · HUP:O96028:PWWP1Q5D50 incomplete side chainsUnqualifiedInspect evidence
6XCG · AUP:O96028:PWWP1V01150 incomplete side chainsARC-3b84ce4c8506Inspect evidence
6XCG · BUP:O96028:PWWP1V01150 incomplete side chainsARC-3b84ce4c8506Inspect evidence
6XCG · CUP:O96028:PWWP1V01140 incomplete side chainsARC-3b84ce4c8506Inspect evidence
7LMT · AUP:O96028:PWWP1Y6V150 incomplete side chainsARC-eec89002db4fInspect evidence
7LMT · HUP:O96028:PWWP1Y6V41 incomplete side chainsUnqualifiedInspect evidence
7LMT · BUP:O96028:PWWP1Y6V150 incomplete side chainsUnqualifiedInspect evidence
7LMT · CUP:O96028:PWWP1Y6V51 incomplete side chainsUnqualifiedInspect evidence
7LMT · CUP:O96028:PWWP1Y6V140 incomplete side chainsUnqualifiedInspect evidence
7LMT · DUP:O96028:PWWP1Y6V41 incomplete side chainsUnqualifiedInspect evidence
7LMT · DUP:O96028:PWWP1Y6V150 incomplete side chainsUnqualifiedInspect evidence
7LMT · EUP:O96028:PWWP1Y6V40 incomplete side chainsUnqualifiedInspect evidence
7LMT · BUP:O96028:PWWP1Y6V41 incomplete side chainsUnqualifiedInspect evidence
7LMT · EUP:O96028:PWWP1Y6V150 incomplete side chainsUnqualifiedInspect evidence
7LMT · AUP:O96028:PWWP1Y6V41 incomplete side chainsUnqualifiedInspect evidence
7LMT · FUP:O96028:PWWP1Y6V150 incomplete side chainsUnqualifiedInspect evidence
7LMT · FUP:O96028:PWWP1Y6V40 incomplete side chainsUnqualifiedInspect evidence
7LMT · GUP:O96028:PWWP1Y6V140 incomplete side chainsUnqualifiedInspect evidence
7LMT · GUP:O96028:PWWP1Y6V51 incomplete side chainsUnqualifiedInspect evidence
7LMT · HUP:O96028:PWWP1Y6V140 incomplete side chainsUnqualifiedInspect evidence
7MDN · AUP:O96028:PWWP1Y6V150 incomplete side chainsARC-eec89002db4fInspect evidence
7MDN · HUP:O96028:PWWP1Y6V51 incomplete side chainsUnqualifiedInspect evidence
7MDN · BUP:O96028:PWWP1Y6V150 incomplete side chainsUnqualifiedInspect evidence
7MDN · CUP:O96028:PWWP1Y6V51 incomplete side chainsUnqualifiedInspect evidence
7MDN · CUP:O96028:PWWP1Y6V140 incomplete side chainsUnqualifiedInspect evidence
7MDN · DUP:O96028:PWWP1Y6V41 incomplete side chainsUnqualifiedInspect evidence
7MDN · DUP:O96028:PWWP1Y6V150 incomplete side chainsUnqualifiedInspect evidence
7MDN · EUP:O96028:PWWP1Y6V40 incomplete side chainsUnqualifiedInspect evidence
7MDN · BUP:O96028:PWWP1Y6V51 incomplete side chainsUnqualifiedInspect evidence
7MDN · EUP:O96028:PWWP1Y6V150 incomplete side chainsUnqualifiedInspect evidence
7MDN · AUP:O96028:PWWP1Y6V51 incomplete side chainsUnqualifiedInspect evidence
7MDN · FUP:O96028:PWWP1Y6V150 incomplete side chainsUnqualifiedInspect evidence
7MDN · FUP:O96028:PWWP1Y6V50 incomplete side chainsUnqualifiedInspect evidence
7MDN · GUP:O96028:PWWP1Y6V140 incomplete side chainsUnqualifiedInspect evidence
7MDN · GUP:O96028:PWWP1Y6V51 incomplete side chainsUnqualifiedInspect evidence
7MDN · HUP:O96028:PWWP1Y6V140 incomplete side chainsUnqualifiedInspect evidence
7VLN · AUP:O96028:PWWP17QC20 incomplete side chainsUnqualifiedInspect evidence
7VLN · BUP:O96028:PWWP17QC140 incomplete side chainsARC-3b84ce4c8506Inspect evidence
9EXW · AUP:O96028:PWWP1A1H7X150 incomplete side chainsARC-3b84ce4c8506Inspect evidence
9EXW · BUP:O96028:PWWP1A1H7X30 incomplete side chainsUnqualifiedInspect evidence
9EXW · BUP:O96028:PWWP1A1H7X150 incomplete side chainsARC-3b84ce4c8506Inspect evidence
9EXX · AUP:O96028:PWWP1A1H7Y150 incomplete side chainsARC-3b84ce4c8506Inspect evidence

Family-wide research evidence

The frozen 39-instance PWWP evolutionary alignment contains 27 domains with at least one observed experimental core and six domains with source-classified deposited research-ligand sites. These totals are not counts of independent ligand-binding experiments. The comparative family gap inventory distinguishes absence of recorded experimental structural evidence from absent biochemical evidence.

Explore domain-level research gaps

Reproducibility and research questions

Original 230 historical mmCIF coordinate files are unchanged. The Phase 6D analysis independently measured 111 ligand-bearing structures and examined 18 representative domains across the family. Native residue identity, experimentally mapped core completeness, source-deposited ligand geometry and literature biochemical evidence remain separately sourced.