STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Experimental coordinates · Exact deposited instances

Ligand contacts & pocket quality

Inspect the atoms that are present, the residues that are missing, and the precise scope of each chemical association.

HDGFL2 PWWP18Z6C · chain APWWP_POCKET_QUALITY_1.0.0

Phase 6C historical atom / receptor assessment Phase 6C.1 full-atom experimental quality inventory

Full-coordinate Phase 6C.1 atom and ligand environment assessment

ExamplesNSD2 · UNC6934NSD3 · BI-932111OA · missing side chains

Source-verified molecular view

8Z6C · A1D73

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Atom completeness · selected chain and annotation core

What can these coordinates support?

Export selected evidence
Select a source-recorded contacting residue to inspect its deposited numbering.

A fully observed annotation core is not a complete-receptor certification. Short annotation intervals, absent peripheral residues, alternate conformers and unexamined density can limit structural interpretation. No receptor preparation was performed.

Frozen 5 Å heavy-atom proximity observations

Contacting residues · A1D73

9 full-chain residues

Heavy-atom distances use the first deposited model and asymmetric unit, occupancy >0 and retained alternate locations. No symmetry expansion or affinity inference. Proximity alone is not evidence of affinity or a functional interaction.

Canonical residueDeposited residueScopeMinimum distanceAtom qualityInspect
MET 15A:15 · entity 15 · label Aannotation core3.2305 ÅUnassessed
TYR 18A:18 · entity 18 · label Aannotation core3.4757 ÅUnassessed
TRP 21A:21 · entity 21 · label Aannotation core3.3231 ÅUnassessed
PHE 44A:44 · entity 44 · label Aannotation core3.3686 ÅUnassessed
PHE 45A:45 · entity 45 · label Aannotation core4.9751 ÅUnassessed
THR 47A:47 · entity 47 · label Aannotation core2.4880 ÅUnassessed
GLU 49A:49 · entity 49 · label Aannotation core3.3060 ÅUnassessed
THR 50A:50 · entity 50 · label Aannotation core4.3798 ÅUnassessed
ALA 51A:51 · entity 51 · label Aannotation core3.9037 ÅUnassessed

Identity, native target and exact site links

Linked experimental assays

Measured preparationMethod / endpointOriginal observationTested constructEvidence
BPPNMR chemical-shift perturbation Kd · = 7.0 µM1–93PWWP:ASSAY:0011
same exact chemical identity and native domain; construct equivalence not assumed

Filterable structural assessment inventory

Coordinate coverage & quality

666 chain/domain records · 22 assessed for atom completeness
Export filtered CSVStructural gap inventory
252 selected chain/domain records. Ligand counts mean deposited proximity; all-atom completeness is assessed only where specified.
PDB / chainDomainCore Cα coveragePWWP-contact ligand instancesAtom assessmentMissing core heavy atoms
3EAE · AHDGFL2 PWWP158 / 580Unassessed—
3EAE · BHDGFL2 PWWP147 / 580Unassessed—
3QBY · AHDGFL2 PWWP158 / 5816Unassessed—
3QBY · BHDGFL2 PWWP151 / 586Unassessed—
3QBY · CHDGFL2 PWWP149 / 585Unassessed—
3QJ6 · AHDGFL2 PWWP156 / 583Unassessed—
7HG0 · AHDGFL2 PWWP158 / 586Unassessed—
7HG0 · BHDGFL2 PWWP154 / 583Unassessed—
7HG0 · CHDGFL2 PWWP154 / 583Unassessed—
7HG1 · AHDGFL2 PWWP158 / 586Unassessed—
7HG1 · BHDGFL2 PWWP154 / 583Unassessed—
7HG1 · CHDGFL2 PWWP154 / 583Unassessed—
7HG2 · AHDGFL2 PWWP158 / 587Unassessed—
7HG2 · BHDGFL2 PWWP154 / 583Unassessed—
7HG2 · CHDGFL2 PWWP154 / 583Unassessed—
7HG3 · AHDGFL2 PWWP158 / 586Unassessed—
7HG3 · BHDGFL2 PWWP154 / 583Unassessed—
7HG3 · CHDGFL2 PWWP153 / 583Unassessed—
7HG4 · AHDGFL2 PWWP158 / 586Unassessed—
7HG4 · BHDGFL2 PWWP152 / 583Unassessed—
7HG4 · CHDGFL2 PWWP155 / 583Unassessed—
7HG5 · AHDGFL2 PWWP158 / 586Unassessed—
7HG5 · BHDGFL2 PWWP154 / 583Unassessed—
7HG5 · CHDGFL2 PWWP155 / 583Unassessed—
7HG6 · AHDGFL2 PWWP158 / 586Unassessed—
7HG6 · BHDGFL2 PWWP152 / 583Unassessed—
7HG6 · CHDGFL2 PWWP155 / 583Unassessed—
7HG7 · AHDGFL2 PWWP158 / 586Unassessed—
7HG7 · BHDGFL2 PWWP153 / 583Unassessed—
7HG7 · CHDGFL2 PWWP153 / 583Unassessed—
7HG8 · AHDGFL2 PWWP158 / 586Unassessed—
7HG8 · BHDGFL2 PWWP154 / 583Unassessed—
7HG8 · CHDGFL2 PWWP153 / 583Unassessed—
7HG9 · AHDGFL2 PWWP158 / 586Unassessed—
7HG9 · BHDGFL2 PWWP152 / 583Unassessed—
7HG9 · CHDGFL2 PWWP152 / 583Unassessed—
7HGA · AHDGFL2 PWWP158 / 586Unassessed—
7HGA · BHDGFL2 PWWP153 / 583Unassessed—
7HGA · CHDGFL2 PWWP151 / 583Unassessed—
7HGB · AHDGFL2 PWWP158 / 586Unassessed—
7HGB · BHDGFL2 PWWP154 / 583Unassessed—
7HGB · CHDGFL2 PWWP153 / 583Unassessed—
7HGC · AHDGFL2 PWWP158 / 586Unassessed—
7HGC · BHDGFL2 PWWP153 / 583Unassessed—
7HGC · CHDGFL2 PWWP155 / 583Unassessed—
7HGD · AHDGFL2 PWWP158 / 587Unassessed—
7HGD · BHDGFL2 PWWP153 / 583Unassessed—
7HGD · CHDGFL2 PWWP150 / 583Unassessed—
7HGE · AHDGFL2 PWWP158 / 586Unassessed—
7HGE · BHDGFL2 PWWP153 / 583Unassessed—
7HGE · CHDGFL2 PWWP154 / 583Unassessed—
7HGF · AHDGFL2 PWWP158 / 586Unassessed—
7HGF · BHDGFL2 PWWP153 / 583Unassessed—
7HGF · CHDGFL2 PWWP153 / 583Unassessed—
7HGG · AHDGFL2 PWWP158 / 586Unassessed—
7HGG · BHDGFL2 PWWP152 / 583Unassessed—
7HGG · CHDGFL2 PWWP151 / 583Unassessed—
7HGH · AHDGFL2 PWWP158 / 586Unassessed—
7HGH · BHDGFL2 PWWP154 / 583Unassessed—
7HGH · CHDGFL2 PWWP150 / 583Unassessed—
7HGI · AHDGFL2 PWWP158 / 586Unassessed—
7HGI · BHDGFL2 PWWP154 / 583Unassessed—
7HGI · CHDGFL2 PWWP151 / 583Unassessed—
7HGJ · AHDGFL2 PWWP158 / 586Unassessed—
7HGJ · BHDGFL2 PWWP154 / 583Unassessed—
7HGJ · CHDGFL2 PWWP156 / 583Unassessed—
7HGK · AHDGFL2 PWWP158 / 586Unassessed—
7HGK · BHDGFL2 PWWP153 / 583Unassessed—
7HGK · CHDGFL2 PWWP151 / 583Unassessed—
7HGL · AHDGFL2 PWWP158 / 586Unassessed—
7HGL · BHDGFL2 PWWP153 / 583Unassessed—
7HGL · CHDGFL2 PWWP154 / 583Unassessed—
7HGM · AHDGFL2 PWWP158 / 587Unassessed—
7HGM · BHDGFL2 PWWP154 / 583Unassessed—
7HGM · CHDGFL2 PWWP153 / 583Unassessed—
7HGN · AHDGFL2 PWWP158 / 586Unassessed—
7HGN · BHDGFL2 PWWP155 / 583Unassessed—
7HGN · CHDGFL2 PWWP151 / 583Unassessed—
7HGO · AHDGFL2 PWWP158 / 586Unassessed—
7HGO · BHDGFL2 PWWP153 / 583Unassessed—
7HGO · CHDGFL2 PWWP153 / 583Unassessed—
7HGP · AHDGFL2 PWWP158 / 586Unassessed—
7HGP · BHDGFL2 PWWP154 / 583Unassessed—
7HGP · CHDGFL2 PWWP150 / 583Unassessed—
7HGQ · AHDGFL2 PWWP158 / 586Unassessed—
7HGQ · BHDGFL2 PWWP155 / 583Unassessed—
7HGQ · CHDGFL2 PWWP151 / 583Unassessed—
7HGR · AHDGFL2 PWWP158 / 586Unassessed—
7HGR · BHDGFL2 PWWP154 / 583Unassessed—
7HGR · CHDGFL2 PWWP154 / 583Unassessed—
7HGS · AHDGFL2 PWWP158 / 586Unassessed—
7HGS · BHDGFL2 PWWP154 / 583Unassessed—
7HGS · CHDGFL2 PWWP149 / 583Unassessed—
7HGT · AHDGFL2 PWWP158 / 586Unassessed—
7HGT · BHDGFL2 PWWP153 / 583Unassessed—
7HGT · CHDGFL2 PWWP154 / 583Unassessed—
7HGU · AHDGFL2 PWWP158 / 586Unassessed—
7HGU · BHDGFL2 PWWP153 / 583Unassessed—
7HGU · CHDGFL2 PWWP153 / 583Unassessed—
7HGV · AHDGFL2 PWWP158 / 587Unassessed—
7HGV · BHDGFL2 PWWP154 / 583Unassessed—
7HGV · CHDGFL2 PWWP153 / 583Unassessed—
7HGW · AHDGFL2 PWWP158 / 586Unassessed—
7HGW · BHDGFL2 PWWP154 / 583Unassessed—
7HGW · CHDGFL2 PWWP152 / 583Unassessed—
7HGX · AHDGFL2 PWWP158 / 586Unassessed—
7HGX · BHDGFL2 PWWP154 / 583Unassessed—
7HGX · CHDGFL2 PWWP151 / 583Unassessed—
7HGY · AHDGFL2 PWWP158 / 586Unassessed—
7HGY · BHDGFL2 PWWP152 / 583Unassessed—
7HGY · CHDGFL2 PWWP155 / 583Unassessed—
7HGZ · AHDGFL2 PWWP158 / 587Unassessed—
7HGZ · BHDGFL2 PWWP154 / 583Unassessed—
7HGZ · CHDGFL2 PWWP151 / 583Unassessed—
7HH0 · AHDGFL2 PWWP158 / 586Unassessed—
7HH0 · BHDGFL2 PWWP154 / 583Unassessed—
7HH0 · CHDGFL2 PWWP152 / 583Unassessed—
7HH1 · AHDGFL2 PWWP158 / 586Unassessed—
7HH1 · BHDGFL2 PWWP154 / 583Unassessed—
7HH1 · CHDGFL2 PWWP152 / 583Unassessed—
7HH2 · AHDGFL2 PWWP158 / 586Unassessed—
7HH2 · BHDGFL2 PWWP154 / 583Unassessed—
7HH2 · CHDGFL2 PWWP151 / 583Unassessed—
7HH3 · AHDGFL2 PWWP158 / 586Unassessed—
7HH3 · BHDGFL2 PWWP154 / 583Unassessed—
7HH3 · CHDGFL2 PWWP153 / 583Unassessed—
7HH4 · AHDGFL2 PWWP158 / 587Unassessed—
7HH4 · BHDGFL2 PWWP155 / 583Unassessed—
7HH4 · CHDGFL2 PWWP156 / 583Unassessed—
7HH5 · AHDGFL2 PWWP158 / 587Unassessed—
7HH5 · BHDGFL2 PWWP153 / 583Unassessed—
7HH5 · CHDGFL2 PWWP155 / 583Unassessed—
7HH6 · AHDGFL2 PWWP158 / 586Unassessed—
7HH6 · BHDGFL2 PWWP153 / 583Unassessed—
7HH6 · CHDGFL2 PWWP154 / 583Unassessed—
7HH7 · AHDGFL2 PWWP158 / 586Unassessed—
7HH7 · BHDGFL2 PWWP151 / 583Unassessed—
7HH7 · CHDGFL2 PWWP151 / 583Unassessed—
7HH8 · AHDGFL2 PWWP158 / 587Unassessed—
7HH8 · BHDGFL2 PWWP154 / 583Unassessed—
7HH8 · CHDGFL2 PWWP153 / 583Unassessed—
7HH9 · AHDGFL2 PWWP158 / 586Unassessed—
7HH9 · BHDGFL2 PWWP154 / 583Unassessed—
7HH9 · CHDGFL2 PWWP158 / 583Unassessed—
7HHA · AHDGFL2 PWWP158 / 587Unassessed—
7HHA · BHDGFL2 PWWP154 / 583Unassessed—
7HHA · CHDGFL2 PWWP155 / 583Unassessed—
7HHB · AHDGFL2 PWWP158 / 586Unassessed—
7HHB · BHDGFL2 PWWP154 / 583Unassessed—
7HHB · CHDGFL2 PWWP154 / 583Unassessed—
7HHC · AHDGFL2 PWWP158 / 586Unassessed—
7HHC · BHDGFL2 PWWP154 / 583Unassessed—
7HHC · CHDGFL2 PWWP152 / 583Unassessed—
7HHD · AHDGFL2 PWWP158 / 586Unassessed—
7HHD · BHDGFL2 PWWP153 / 583Unassessed—
7HHD · CHDGFL2 PWWP153 / 583Unassessed—
7HHE · AHDGFL2 PWWP158 / 587Unassessed—
7HHE · BHDGFL2 PWWP154 / 583Unassessed—
7HHE · CHDGFL2 PWWP154 / 583Unassessed—
7HHF · AHDGFL2 PWWP158 / 586Unassessed—
7HHF · BHDGFL2 PWWP153 / 583Unassessed—
7HHF · CHDGFL2 PWWP154 / 583Unassessed—
7HHG · AHDGFL2 PWWP158 / 586Unassessed—
7HHG · BHDGFL2 PWWP154 / 583Unassessed—
7HHG · CHDGFL2 PWWP151 / 583Unassessed—
7HHH · AHDGFL2 PWWP158 / 586Unassessed—
7HHH · BHDGFL2 PWWP154 / 583Unassessed—
7HHH · CHDGFL2 PWWP154 / 583Unassessed—
7HHI · AHDGFL2 PWWP158 / 586Unassessed—
7HHI · BHDGFL2 PWWP153 / 583Unassessed—
7HHI · CHDGFL2 PWWP154 / 583Unassessed—
7HHJ · AHDGFL2 PWWP158 / 586Unassessed—
7HHJ · BHDGFL2 PWWP154 / 583Unassessed—
7HHJ · CHDGFL2 PWWP153 / 583Unassessed—
7HHK · AHDGFL2 PWWP158 / 587Unassessed—
7HHK · BHDGFL2 PWWP154 / 583Unassessed—
7HHK · CHDGFL2 PWWP153 / 583Unassessed—
7HHL · AHDGFL2 PWWP158 / 586Unassessed—
7HHL · BHDGFL2 PWWP154 / 583Unassessed—
7HHL · CHDGFL2 PWWP154 / 583Unassessed—
7HHM · AHDGFL2 PWWP158 / 586Unassessed—
7HHM · BHDGFL2 PWWP154 / 583Unassessed—
7HHM · CHDGFL2 PWWP153 / 583Unassessed—
7HHN · AHDGFL2 PWWP158 / 586Unassessed—
7HHN · BHDGFL2 PWWP154 / 583Unassessed—
7HHN · CHDGFL2 PWWP153 / 583Unassessed—
7HHO · AHDGFL2 PWWP158 / 586Unassessed—
7HHO · BHDGFL2 PWWP154 / 583Unassessed—
7HHO · CHDGFL2 PWWP153 / 583Unassessed—
7HHP · AHDGFL2 PWWP158 / 586Unassessed—
7HHP · BHDGFL2 PWWP154 / 583Unassessed—
7HHP · CHDGFL2 PWWP153 / 583Unassessed—
7HHQ · AHDGFL2 PWWP158 / 587Unassessed—
7HHQ · BHDGFL2 PWWP154 / 583Unassessed—
7HHQ · CHDGFL2 PWWP155 / 583Unassessed—
7HHR · AHDGFL2 PWWP158 / 586Unassessed—
7HHR · BHDGFL2 PWWP154 / 583Unassessed—
7HHR · CHDGFL2 PWWP151 / 583Unassessed—
8Z6C · AHDGFL2 PWWP158 / 584Unassessed—
8Z6C · BHDGFL2 PWWP158 / 583Unassessed—
8Z6C · CHDGFL2 PWWP158 / 584Unassessed—
8Z6O · AHDGFL2 PWWP158 / 581Unassessed—
8Z6O · BHDGFL2 PWWP158 / 581Unassessed—
9G91 · AHDGFL2 PWWP158 / 584Unassessed—
9G91 · BHDGFL2 PWWP158 / 586Unassessed—
9G94 · AHDGFL2 PWWP158 / 585Unassessed—
9G94 · BHDGFL2 PWWP158 / 583Unassessed—
9G94 · CHDGFL2 PWWP158 / 582Unassessed—
9G96 · AHDGFL2 PWWP158 / 585Unassessed—
9G96 · BHDGFL2 PWWP158 / 586Unassessed—
9GRS · AHDGFL2 PWWP158 / 586Unassessed—
9GRS · BHDGFL2 PWWP158 / 584Unassessed—
9GRS · CHDGFL2 PWWP158 / 583Unassessed—
9GRT · AHDGFL2 PWWP158 / 586Unassessed—
9GRT · BHDGFL2 PWWP154 / 583Unassessed—
9GRT · CHDGFL2 PWWP150 / 585Unassessed—
9GRU · AHDGFL2 PWWP158 / 585Unassessed—
9GRU · BHDGFL2 PWWP158 / 583Unassessed—
9GRU · CHDGFL2 PWWP149 / 582Unassessed—
9GRV · AHDGFL2 PWWP158 / 585Unassessed—
9GRV · BHDGFL2 PWWP158 / 582Unassessed—
9GRV · CHDGFL2 PWWP158 / 582Unassessed—
9I7A · AHDGFL2 PWWP158 / 580Unassessed—
9I7A · BHDGFL2 PWWP158 / 581Unassessed—
9I7B · AHDGFL2 PWWP158 / 584Unassessed—
9I7B · BHDGFL2 PWWP155 / 583Unassessed—
9I7C · AHDGFL2 PWWP158 / 585Unassessed—
9I7C · BHDGFL2 PWWP153 / 583Unassessed—
9I7C · CHDGFL2 PWWP150 / 582Unassessed—
9I7D · AHDGFL2 PWWP153 / 586Unassessed—
9I7D · BHDGFL2 PWWP153 / 584Unassessed—
9I7E · AHDGFL2 PWWP158 / 581Unassessed—
9I7E · BHDGFL2 PWWP158 / 582Unassessed—
9I7F · AHDGFL2 PWWP153 / 582Unassessed—
9I7F · BHDGFL2 PWWP155 / 580Unassessed—
9I7F · CHDGFL2 PWWP158 / 580Unassessed—
9I7F · DHDGFL2 PWWP158 / 580Unassessed—
9I7F · EHDGFL2 PWWP154 / 581Unassessed—
9I7F · FHDGFL2 PWWP154 / 580Unassessed—
9I7G · AHDGFL2 PWWP158 / 583Unassessed—
9I7G · BHDGFL2 PWWP152 / 583Unassessed—
9I7G · CHDGFL2 PWWP153 / 581Unassessed—
9I7H · AHDGFL2 PWWP158 / 581Unassessed—
9I7H · BHDGFL2 PWWP158 / 581Unassessed—
9I7I · AHDGFL2 PWWP158 / 584Unassessed—
9I7I · BHDGFL2 PWWP152 / 583Unassessed—
9I7I · CHDGFL2 PWWP150 / 582Unassessed—
9I7J · AHDGFL2 PWWP158 / 580Unassessed—
9I7J · BHDGFL2 PWWP153 / 580Unassessed—
9I7J · CHDGFL2 PWWP158 / 581Unassessed—
9I7J · DHDGFL2 PWWP158 / 582Unassessed—
9I7J · EHDGFL2 PWWP152 / 580Unassessed—
Source bytes, methods and provenance

Detailed atom completeness only for the three packaged original-coordinate files; quality uses observed atom-name union across positive-occupancy alternate conformers, with per-alt differences retained. Missing entire residues are separate. Nonstandard amino-acid templates are unassessed. No density reinterpretation, receptor repair, docking or MD.

Coordinate SHA-256: a52b0ce0d915a4ec6357f5dce14e0dbbacdb5fa856c24981a9187cf4168156c2

Source PDB: https://www.rcsb.org/structure/8Z6C. Original coordinate file: mmCIF. Original annotation and contact calculations are retained unchanged; the additional completeness assessment is PWWP_POCKET_QUALITY_1.0.0.

Methods and reproducible builder are included under analysis/phase5_pockets and scripts/build_phase5_pockets.py in the downloadable release.