STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Phase 6D · Source-verified experimental structures

Comparative binding sites

Compare original deposited PWWP recognition environments across protein domains. Source-qualified ligand instances, evolutionary residue correspondence, local geometry and biochemical evidence retain separate meanings.

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283Calculated deposited research-ligand instances
254Strict within-entry observation groups
49Qualified geometric archetypes
11617Qualified representative comparisons

39 evolutionary instances · 18 experimental representatives

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All source-qualified ligand instances

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283 matching deposited instances; results are separated by experimental chain and exact ligand instance. Select a site to inspect original coordinates, mapped residues, local chemistry and geometric limitations.

DepositionMapped PWWP domainDeposited ligandLocal 5 Å contactsCore qualityArchetypeDetail
7HH6 · BUP:Q7Z4V5:PWWP1UUY80 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HH7 · AUP:Q7Z4V5:PWWP1LJR20 incomplete side chainsUnqualifiedInspect evidence
7HH7 · BUP:Q7Z4V5:PWWP1LJR70 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HH8 · AUP:Q7Z4V5:PWWP1KF880 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HH9 · AUP:Q7Z4V5:PWWP1A1A3W20 incomplete side chainsUnqualifiedInspect evidence
7HH9 · BUP:Q7Z4V5:PWWP1A1A3W80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HH9 · CUP:Q7Z4V5:PWWP1A1A3W80 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HHA · AUP:Q7Z4V5:PWWP1TE080 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHA · AUP:Q7Z4V5:PWWP1TE020 incomplete side chainsARC-ff6c3a4a5bb1Inspect evidence
7HHA · BUP:Q7Z4V5:PWWP1TE080 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHA · CUP:Q7Z4V5:PWWP1TE080 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HHB · AUP:Q7Z4V5:PWWP1A1A3U20 incomplete side chainsUnqualifiedInspect evidence
7HHB · BUP:Q7Z4V5:PWWP1A1A3U80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHB · CUP:Q7Z4V5:PWWP1A1A3U80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHC · AUP:Q7Z4V5:PWWP1SYX20 incomplete side chainsARC-06088c103390Inspect evidence
7HHC · BUP:Q7Z4V5:PWWP1SYX60 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHC · CUP:Q7Z4V5:PWWP1SYX70 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHD · AUP:Q7Z4V5:PWWP1A1A3V30 incomplete side chainsARC-f06e9fa3c694Inspect evidence
7HHD · BUP:Q7Z4V5:PWWP1A1A3V60 incomplete side chainsARC-a282f44e9813Inspect evidence
7HHE · AUP:Q7Z4V5:PWWP1A1A3880 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHE · AUP:Q7Z4V5:PWWP1A1A3820 incomplete side chainsUnqualifiedInspect evidence
7HHE · BUP:Q7Z4V5:PWWP1A1A3880 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HHE · CUP:Q7Z4V5:PWWP1A1A3880 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HHF · AUP:Q7Z4V5:PWWP1A1A3620 incomplete side chainsARC-3abb6b4bc264Inspect evidence
7HHF · BUP:Q7Z4V5:PWWP1A1A3660 incomplete side chainsARC-c2eae95792fdInspect evidence
7HHG · AUP:Q7Z4V5:PWWP1W1A20 incomplete side chainsARC-2694d43161dbInspect evidence
7HHG · BUP:Q7Z4V5:PWWP1W1A60 incomplete side chainsARC-c2eae95792fdInspect evidence
7HHH · AUP:Q7Z4V5:PWWP1A1A3T20 incomplete side chainsARC-99cb57096242Inspect evidence
7HHH · BUP:Q7Z4V5:PWWP1A1A3T60 incomplete side chainsARC-c2eae95792fdInspect evidence
7HHI · AUP:Q7Z4V5:PWWP1A1H9V20 incomplete side chainsUnqualifiedInspect evidence
7HHI · BUP:Q7Z4V5:PWWP1A1H9V90 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHJ · AUP:Q7Z4V5:PWWP1WJ720 incomplete side chainsARC-8aa616edc134Inspect evidence
7HHJ · BUP:Q7Z4V5:PWWP1WJ780 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHK · AUP:Q7Z4V5:PWWP1LPU81 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHK · AUP:Q7Z4V5:PWWP1LPU20 incomplete side chainsARC-c3e3b457bfa4Inspect evidence
7HHK · BUP:Q7Z4V5:PWWP1LPU90 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHK · CUP:Q7Z4V5:PWWP1LPU80 incomplete side chainsUnqualifiedInspect evidence
7HHL · AUP:Q7Z4V5:PWWP1A1A3720 incomplete side chainsUnqualifiedInspect evidence
7HHL · BUP:Q7Z4V5:PWWP1A1A3780 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHL · CUP:Q7Z4V5:PWWP1A1A3790 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHM · AUP:Q7Z4V5:PWWP1UWD20 incomplete side chainsUnqualifiedInspect evidence
7HHM · BUP:Q7Z4V5:PWWP1UWD60 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHM · CUP:Q7Z4V5:PWWP1UWD60 incomplete side chainsARC-a282f44e9813Inspect evidence
7HHN · AUP:Q7Z4V5:PWWP1A1A3020 incomplete side chainsARC-b5c323cecc61Inspect evidence
7HHN · BUP:Q7Z4V5:PWWP1A1A3080 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHO · AUP:Q7Z4V5:PWWP1A1H9U20 incomplete side chainsARC-30070d7c924cInspect evidence
7HHO · BUP:Q7Z4V5:PWWP1A1H9U80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHP · AUP:Q7Z4V5:PWWP1A1A3Z20 incomplete side chainsUnqualifiedInspect evidence
7HHP · BUP:Q7Z4V5:PWWP1A1A3Z80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHQ · AUP:Q7Z4V5:PWWP1A1A3Y60 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HHQ · AUP:Q7Z4V5:PWWP1A1A3Y20 incomplete side chainsARC-bbf338ada6b5Inspect evidence
7HHQ · BUP:Q7Z4V5:PWWP1A1A3Y60 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HHQ · CUP:Q7Z4V5:PWWP1A1A3Y61 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HHR · AUP:Q7Z4V5:PWWP1YEB20 incomplete side chainsUnqualifiedInspect evidence
7HHR · BUP:Q7Z4V5:PWWP1YEB80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
8Z6C · AUP:Q7Z4V5:PWWP1A1D7390 incomplete side chainsARC-2d1bd36d0095Inspect evidence
8Z6C · CUP:Q7Z4V5:PWWP1A1D7330 incomplete side chainsARC-047c34369910Inspect evidence
8Z6C · BUP:Q7Z4V5:PWWP1A1D7390 incomplete side chainsARC-2d1bd36d0095Inspect evidence
8Z6C · CUP:Q7Z4V5:PWWP1A1D73100 incomplete side chainsUnqualifiedInspect evidence
8Z6O · BUP:Q7Z4V5:PWWP1QMR80 incomplete side chainsARC-2d1bd36d0095Inspect evidence

Family-wide research evidence

The frozen 39-instance PWWP evolutionary alignment contains 27 domains with at least one observed experimental core and six domains with source-classified deposited research-ligand sites. These totals are not counts of independent ligand-binding experiments. The comparative family gap inventory distinguishes absence of recorded experimental structural evidence from absent biochemical evidence.

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Reproducibility and research questions

Original 230 historical mmCIF coordinate files are unchanged. The Phase 6D analysis independently measured 111 ligand-bearing structures and examined 18 representative domains across the family. Native residue identity, experimentally mapped core completeness, source-deposited ligand geometry and literature biochemical evidence remain separately sourced.