STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Phase 6D · Source-verified experimental structures

Comparative binding sites

Compare original deposited PWWP recognition environments across protein domains. Source-qualified ligand instances, evolutionary residue correspondence, local geometry and biochemical evidence retain separate meanings.

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283Calculated deposited research-ligand instances
254Strict within-entry observation groups
49Qualified geometric archetypes
11617Qualified representative comparisons

39 evolutionary instances · 18 experimental representatives

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283 matching deposited instances; results are separated by experimental chain and exact ligand instance. Select a site to inspect original coordinates, mapped residues, local chemistry and geometric limitations.

DepositionMapped PWWP domainDeposited ligandLocal 5 Å contactsCore qualityArchetypeDetail
9EXW · BUP:O96028:PWWP1A1H7X150 incomplete side chainsARC-3b84ce4c8506Inspect evidence
9EXX · AUP:O96028:PWWP1A1H7Y150 incomplete side chainsARC-3b84ce4c8506Inspect evidence
9EXX · BUP:O96028:PWWP1A1H7Y30 incomplete side chainsUnqualifiedInspect evidence
9EXX · BUP:O96028:PWWP1A1H7Y150 incomplete side chainsARC-3b84ce4c8506Inspect evidence
9EXY · AUP:O96028:PWWP1A1H7Z150 incomplete side chainsARC-3b84ce4c8506Inspect evidence
9EXY · BUP:O96028:PWWP1A1H7Z150 incomplete side chainsUnqualifiedInspect evidence
9FOC · AUP:O96028:PWWP1A1IFS140 incomplete side chainsARC-eec89002db4fInspect evidence
9FOC · AUP:O96028:PWWP1A1IEG140 incomplete side chainsARC-eec89002db4fInspect evidence
9FOC · BUP:O96028:PWWP1A1IEG120 incomplete side chainsUnqualifiedInspect evidence
9FOC · BUP:O96028:PWWP1A1IFS120 incomplete side chainsUnqualifiedInspect evidence
9FOE · AUP:O96028:PWWP1A1IEF140 incomplete side chainsARC-3b84ce4c8506Inspect evidence
9KN9 · AUP:O96028:PWWP1A1EF6120 incomplete side chainsARC-7380f791923dInspect evidence
9KN9 · BUP:O96028:PWWP1A1EF6120 incomplete side chainsUnqualifiedInspect evidence
9KNA · AUP:O96028:PWWP16Y3112 incomplete side chainsARC-148a2618cd0cInspect evidence
9KNA · BUP:O96028:PWWP16Y310 incomplete side chainsUnqualifiedInspect evidence
9KNA · AUP:O96028:PWWP16Y310 incomplete side chainsUnqualifiedInspect evidence
9KNA · BUP:O96028:PWWP16Y3111 incomplete side chainsARC-f8d352bb716fInspect evidence
9KNB · AUP:O96028:PWWP1A1EF7131 incomplete side chainsARC-2015fed0ce18Inspect evidence
9Y60 · AUP:O96028:PWWP1A1CSP140 incomplete side chainsARC-eec89002db4fInspect evidence
9Y61 · AUP:O96028:PWWP1A1CSQ120 incomplete side chainsARC-3770359f4b2dInspect evidence
5C6S · AUP:P55201:PWWP14K881 incomplete side chainsARC-a35a63aa2ff3Inspect evidence
7HG0 · AUP:Q7Z4V5:PWWP1A1A3P20 incomplete side chainsUnqualifiedInspect evidence
7HG0 · BUP:Q7Z4V5:PWWP1A1A3P80 incomplete side chainsARC-3984f43d3854Inspect evidence
7HG1 · AUP:Q7Z4V5:PWWP1UWS20 incomplete side chainsARC-3b42ce70b99eInspect evidence
7HG1 · BUP:Q7Z4V5:PWWP1UWS80 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HG2 · AUP:Q7Z4V5:PWWP1A1H9760 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HG2 · AUP:Q7Z4V5:PWWP1U0S20 incomplete side chainsUnqualifiedInspect evidence
7HG2 · BUP:Q7Z4V5:PWWP1U0S71 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HG3 · AUP:Q7Z4V5:PWWP1ZQD30 incomplete side chainsARC-282fb308f269Inspect evidence
7HG3 · BUP:Q7Z4V5:PWWP1ZQD80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HG4 · AUP:Q7Z4V5:PWWP1UXG30 incomplete side chainsARC-cf9e76b828f3Inspect evidence
7HG4 · BUP:Q7Z4V5:PWWP1UXG80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HG5 · AUP:Q7Z4V5:PWWP1WV420 incomplete side chainsUnqualifiedInspect evidence
7HG5 · BUP:Q7Z4V5:PWWP1WV490 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HG5 · CUP:Q7Z4V5:PWWP1WV490 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HG6 · AUP:Q7Z4V5:PWWP12NU20 incomplete side chainsARC-d4433b81056dInspect evidence
7HG6 · BUP:Q7Z4V5:PWWP12NU60 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HG7 · AUP:Q7Z4V5:PWWP1EJQ20 incomplete side chainsUnqualifiedInspect evidence
7HG7 · BUP:Q7Z4V5:PWWP1EJQ80 incomplete side chainsARC-3984f43d3854Inspect evidence
7HG8 · AUP:Q7Z4V5:PWWP1VZP20 incomplete side chainsUnqualifiedInspect evidence
7HG8 · BUP:Q7Z4V5:PWWP1VZP91 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HG9 · AUP:Q7Z4V5:PWWP1A1A3Q20 incomplete side chainsARC-0fc1bbd2945eInspect evidence
7HG9 · BUP:Q7Z4V5:PWWP1A1A3Q80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HG9 · CUP:Q7Z4V5:PWWP1A1A3Q80 incomplete side chainsARC-3984f43d3854Inspect evidence
7HGA · AUP:Q7Z4V5:PWWP1TU630 incomplete side chainsARC-cc72a8f67e05Inspect evidence
7HGA · BUP:Q7Z4V5:PWWP1TU660 incomplete side chainsARC-c2eae95792fdInspect evidence
7HGB · AUP:Q7Z4V5:PWWP1A1A3420 incomplete side chainsUnqualifiedInspect evidence
7HGB · BUP:Q7Z4V5:PWWP1A1A3490 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGC · AUP:Q7Z4V5:PWWP1A1AJ520 incomplete side chainsARC-97811c21c00eInspect evidence
7HGC · BUP:Q7Z4V5:PWWP1A1AJ560 incomplete side chainsARC-c2eae95792fdInspect evidence
7HGD · AUP:Q7Z4V5:PWWP1A1A3S60 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGD · AUP:Q7Z4V5:PWWP1A1A3S30 incomplete side chainsARC-08887d7fdbacInspect evidence
7HGD · BUP:Q7Z4V5:PWWP1A1A3S60 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGE · AUP:Q7Z4V5:PWWP1X0S20 incomplete side chainsUnqualifiedInspect evidence
7HGE · BUP:Q7Z4V5:PWWP1X0S90 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGF · AUP:Q7Z4V5:PWWP1T0Y20 incomplete side chainsUnqualifiedInspect evidence
7HGF · BUP:Q7Z4V5:PWWP1T0Y90 incomplete side chainsARC-3984f43d3854Inspect evidence
7HGG · AUP:Q7Z4V5:PWWP1A1A4B20 incomplete side chainsUnqualifiedInspect evidence
7HGG · BUP:Q7Z4V5:PWWP1A1A4B80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGH · AUP:Q7Z4V5:PWWP1A1A4A30 incomplete side chainsARC-84cb22260c1bInspect evidence

Family-wide research evidence

The frozen 39-instance PWWP evolutionary alignment contains 27 domains with at least one observed experimental core and six domains with source-classified deposited research-ligand sites. These totals are not counts of independent ligand-binding experiments. The comparative family gap inventory distinguishes absence of recorded experimental structural evidence from absent biochemical evidence.

Explore domain-level research gaps

Reproducibility and research questions

Original 230 historical mmCIF coordinate files are unchanged. The Phase 6D analysis independently measured 111 ligand-bearing structures and examined 18 representative domains across the family. Native residue identity, experimentally mapped core completeness, source-deposited ligand geometry and literature biochemical evidence remain separately sourced.