PWWPAtlas
STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Experimental structure

5Y1Z

Crystal structure of ZMYND8 PHD-BROMO-PWWP tandem in complex with Drebrin ADF-H domain

Complexes PWWP coordinates observed X-RAY DIFFRACTION

Original coordinates

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PDB deposition
5Y1Z Deposited model
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Original coordinates are available from a locally verified historical archive or the bundled source and load on request.

Coordinate coverage

Mapped chains

2 chain / domain rows

Label and author chain identifiers are kept separately. Observed Cα counts refer to each mapped annotation core.

ProteinLabel chainAuthor chainDomainObserved Cα / coreObserved substitutions
ZMYND8C["C"]UP:Q9ULU4:PWWP151 / 510
ZMYND8D["D"]UP:Q9ULU4:PWWP151 / 510

Chemical identity

Chemical components and interpretation

4 component records
CCDNameRoleFull InChIKey
SO4SULFATE IONion/additive
incidental		QAOWNCQODCNURD-UHFFFAOYSA-L
ZNZINC IONion/cofactor_requires_context
incidental		PTFCDOFLOPIGGS-UHFFFAOYSA-N
GOLGLYCEROLcryoprotectant/additive
incidental		PEDCQBHIVMGVHV-UHFFFAOYSA-N
HOHWATERsolvent
incidental		XLYOFNOQVPJJNP-UHFFFAOYSA-N

Geometry, with defined scope

Independent contact evidence

Inspect 16 retained contact records
CCD / instanceProtein chainContact classMinimum core / broader domain distance Å
GOL · QZMYND8 · Cnoncore contact in multidomain chain15.1 / 5.8
GOL · QZMYND8 · Dnoncore contact in multidomain chain35.1 / 35.1
SO4 · EZMYND8 · Cnoncore contact in multidomain chain28.3 / 28.3
SO4 · IZMYND8 · Cbroader Pfam PWWP contact5.38 / 4.99
SO4 · JZMYND8 · Cnoncore contact in multidomain chain8.95 / 5.21
SO4 · KZMYND8 · Cnative annotation core contact3.07 / 3.07
SO4 · JZMYND8 · Dnoncore contact in multidomain chain36.9 / 36.9
SO4 · OZMYND8 · Dnative annotation core contact2.61 / 2.61
SO4 · PZMYND8 · Dnative annotation core contact3.29 / 3.29
ZN · FZMYND8 · Cnoncore contact in multidomain chain29.2 / 29.2
ZN · GZMYND8 · Cnative annotation core contact2.2 / 2.2
ZN · HZMYND8 · Cnoncore contact in multidomain chain25.7 / 25.7
ZN · MZMYND8 · Cnoncore contact in multidomain chain16.6 / 7.27
ZN · LZMYND8 · Dnoncore contact in multidomain chain25.7 / 25.7
ZN · MZMYND8 · Dnoncore contact in multidomain chain29.1 / 29.1
ZN · NZMYND8 · Dnative annotation core contact2.22 / 2.22

Biological partners

Drebrin · protein/peptide · label chains ["A","B"]

Source interpretation

Focused scientific audit

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This entry was included in all-entry coordinate/contact calculations but not in the 36-entry focused structural sample.