Experimental coordinates · Exact deposited instances
Ligand contacts & pocket quality
Inspect the atoms that are present, the residues that are missing, and the precise scope of each chemical association.
Phase 6C historical atom / receptor assessment Phase 6C.1 full-atom experimental quality inventory
Full-coordinate Phase 6C.1 atom and ligand environment assessment
Load the checksum-verified original coordinates to explore the selected chain and ligand.
Drag to rotate · scroll to zoom · arrow keys rotate · + / − zoom · Home resets. Select a residue below to highlight its observed atoms.
Atom completeness · selected chain and annotation core
What can these coordinates support?
A fully observed annotation core is not a complete-receptor certification. Short annotation intervals, absent peripheral residues, alternate conformers and unexamined density can limit structural interpretation. No receptor preparation was performed.
Frozen 5 Å heavy-atom proximity observations
Contacting residues · BTB
Heavy-atom distances use the first deposited model and asymmetric unit, occupancy >0 and retained alternate locations. No symmetry expansion or affinity inference. Proximity alone is not evidence of affinity or a functional interaction.
| Canonical residue | Deposited residue | Scope | Minimum distance | Atom quality | Inspect |
|---|---|---|---|---|---|
| ALA 18 | A:18 · entity 12 · label A | annotation core | 4.8311 Å | Unassessed | |
| VAL 20 | A:20 · entity 14 · label A | annotation core | 3.8089 Å | Unassessed | |
| TYR 23 | A:23 · entity 17 · label A | annotation core | 3.4290 Å | Unassessed | |
| PRO 24 | A:24 · entity 18 · label A | annotation core | 4.1444 Å | Unassessed | |
| TRP 26 | A:26 · entity 20 · label A | annotation core | 3.3867 Å | Unassessed | |
| PHE 43 | A:43 · entity 37 · label A | annotation core | 3.4553 Å | Unassessed | |
| THR 46 | A:46 · entity 40 · label A | annotation core | 2.6852 Å | Unassessed | |
| GLU 48 | A:48 · entity 42 · label A | annotation core | 2.6311 Å | Unassessed | |
| THR 49 | A:49 · entity 43 · label A | annotation core | 3.8949 Å | Unassessed | |
| ALA 50 | A:50 · entity 44 · label A | annotation core | 3.3627 Å | Unassessed |
Identity, native target and exact site links
Linked experimental assays
| Measured preparation | Method / endpoint | Original observation | Tested construct | Evidence |
|---|---|---|---|---|
| No exact site-to-assay link is established in the frozen evidence graph. Visit the domain's Ligands & Bioactivity section for newly curated or structure-free observations. | ||||
Filterable structural assessment inventory
Coordinate coverage & quality
| PDB / chain | Domain | Core Cα coverage | PWWP-contact ligand instances | Atom assessment | Missing core heavy atoms |
|---|---|---|---|---|---|
| 6KCO · A | Jasper PWWP1 | 52 / 52 | 0 | Unassessed | — |
| 6KCO · B | Jasper PWWP1 | 52 / 52 | 0 | Unassessed | — |
| 6KCO · C | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KCO · D | Jasper PWWP1 | 51 / 52 | 0 | Unassessed | — |
| 6KCO · E | Jasper PWWP1 | 51 / 52 | 0 | Unassessed | — |
| 6KCO · F | Jasper PWWP1 | 51 / 52 | 0 | Unassessed | — |
| 6KCO · G | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KCO · H | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KCO · I | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KCO · J | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KCO · K | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KCO · L | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KCO · M | Jasper PWWP1 | 52 / 52 | 0 | Unassessed | — |
| 6KCO · N | Jasper PWWP1 | 51 / 52 | 0 | Unassessed | — |
| 6KCO · O | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KCO · P | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KCP · A | Jasper PWWP1 | 52 / 52 | 0 | Unassessed | — |
| 6KCP · B | Jasper PWWP1 | 52 / 52 | 0 | Unassessed | — |
| 6KCP · C | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KCP · E | Jasper PWWP1 | 52 / 52 | 0 | Unassessed | — |
| 6KCU · A | Jasper PWWP1 | 52 / 52 | 1 | Unassessed | — |
| 6KD6 · A | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KD6 · B | Jasper PWWP1 | 51 / 52 | 0 | Unassessed | — |
| 6KD6 · C | Jasper PWWP1 | 50 / 52 | 0 | Unassessed | — |
| 6KD6 · D | Jasper PWWP1 | 49 / 52 | 0 | Unassessed | — |
Source bytes, methods and provenance
Detailed atom completeness only for the three packaged original-coordinate files; quality uses observed atom-name union across positive-occupancy alternate conformers, with per-alt differences retained. Missing entire residues are separate. Nonstandard amino-acid templates are unassessed. No density reinterpretation, receptor repair, docking or MD.
Coordinate SHA-256: 5726bdbb11bcd1a0bee30638057f898cfabc80ee54d0f9cafbd6050861f46f8b
Source PDB: https://www.rcsb.org/structure/6KCU. Original coordinate file: mmCIF. Original annotation and contact calculations are retained unchanged; the additional completeness assessment is PWWP_POCKET_QUALITY_1.0.0.
Methods and reproducible builder are included under analysis/phase5_pockets and scripts/build_phase5_pockets.py in the downloadable release.