STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Phase 6D · Source-verified experimental structures

Comparative binding sites

Compare original deposited PWWP recognition environments across protein domains. Source-qualified ligand instances, evolutionary residue correspondence, local geometry and biochemical evidence retain separate meanings.

Download science summary
283Calculated deposited research-ligand instances
254Strict within-entry observation groups
49Qualified geometric archetypes
11617Qualified representative comparisons

39 evolutionary instances · 18 experimental representatives

Choose two experimentally represented domains

All source-qualified ligand instances

Inspect deposited environments

Clear

283 matching deposited instances; results are separated by experimental chain and exact ligand instance. Select a site to inspect original coordinates, mapped residues, local chemistry and geometric limitations.

DepositionMapped PWWP domainDeposited ligandLocal 5 Å contactsCore qualityArchetypeDetail
9G91 · AUP:Q7Z4V5:PWWP1A1II3100 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9G91 · BUP:Q7Z4V5:PWWP1A1II3100 incomplete side chainsUnqualifiedInspect evidence
9G94 · AUP:Q7Z4V5:PWWP1A1D7380 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9G94 · AUP:Q7Z4V5:PWWP1A1D7310 incomplete side chainsUnqualifiedInspect evidence
9G94 · BUP:Q7Z4V5:PWWP1A1D7380 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9G94 · CUP:Q7Z4V5:PWWP1A1D73100 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9G96 · AUP:Q7Z4V5:PWWP1A1II2100 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9G96 · BUP:Q7Z4V5:PWWP1A1II2100 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9GRS · AUP:Q7Z4V5:PWWP1A1H6Y20 incomplete side chainsUnqualifiedInspect evidence
9GRS · BUP:Q7Z4V5:PWWP1A1H6Y80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9GRT · AUP:Q7Z4V5:PWWP1BYZ70 incomplete side chainsARC-c2eae95792fdInspect evidence
9GRT · CUP:Q7Z4V5:PWWP1BYZ60 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9GRU · AUP:Q7Z4V5:PWWP1PYZ80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9GRU · AUP:Q7Z4V5:PWWP1PYZ10 incomplete side chainsUnqualifiedInspect evidence
9GRU · BUP:Q7Z4V5:PWWP1PYZ80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9GRU · CUP:Q7Z4V5:PWWP1PYZ80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
9GRV · AUP:Q7Z4V5:PWWP1HHN80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
6G24 · AUP:Q9BZ95:PWWP1EH2120 incomplete side chainsARC-ce03fd53cc9bInspect evidence
6G25 · AUP:Q9BZ95:PWWP1EHQ100 incomplete side chainsARC-46ff9e6fe76bInspect evidence
6G27 · AUP:Q9BZ95:PWWP1EHE120 incomplete side chainsARC-46ff9e6fe76bInspect evidence
6G29 · AUP:Q9BZ95:PWWP1EHK110 incomplete side chainsARC-46ff9e6fe76bInspect evidence
6G2B · AUP:Q9BZ95:PWWP1EH8100 incomplete side chainsARC-46ff9e6fe76bInspect evidence
6G2C · AUP:Q9BZ95:PWWP1EHT110 incomplete side chainsARC-46ff9e6fe76bInspect evidence
6G2E · AUP:Q9BZ95:PWWP1EHH110 incomplete side chainsARC-46ff9e6fe76bInspect evidence
6G2F · AUP:Q9BZ95:PWWP1EHW130 incomplete side chainsARC-46ff9e6fe76bInspect evidence
6G2O · AUP:Q9BZ95:PWWP1EJE130 incomplete side chainsARC-46ff9e6fe76bInspect evidence
5NR3 · AUP:Q9UBC3:PWWP195E70 incomplete side chainsARC-547e6596704aInspect evidence
5NR3 · BUP:Q9UBC3:PWWP195E80 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
5NRR · AUP:Q9UBC3:PWWP196E100 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
5NRR · BUP:Q9UBC3:PWWP196E100 incomplete side chainsUnqualifiedInspect evidence
5NRS · AUP:Q9UBC3:PWWP1962100 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
5NRS · BUP:Q9UBC3:PWWP1962100 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
5NRV · AUP:Q9UBC3:PWWP196K120 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
5NRV · BUP:Q9UBC3:PWWP196K130 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
5NV0 · AUP:Q9UBC3:PWWP19AH90 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
5NV0 · BUP:Q9UBC3:PWWP19AH110 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
5NV2 · AUP:Q9UBC3:PWWP19AE90 incomplete side chainsARC-547e6596704aInspect evidence
5NV2 · BUP:Q9UBC3:PWWP19AE100 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
5NV7 · AUP:Q9UBC3:PWWP19AK60 incomplete side chainsARC-547e6596704aInspect evidence
5NV7 · BUP:Q9UBC3:PWWP19AK70 incomplete side chainsARC-547e6596704aInspect evidence
5NVO · AUP:Q9UBC3:PWWP1CHT60 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
5NVO · BUP:Q9UBC3:PWWP1CHT60 incomplete side chainsARC-3a2018f5b1a8Inspect evidence
6R3E · AUP:Q9UBC3:PWWP196H80 incomplete side chainsARC-547e6596704aInspect evidence

Family-wide research evidence

The frozen 39-instance PWWP evolutionary alignment contains 27 domains with at least one observed experimental core and six domains with source-classified deposited research-ligand sites. These totals are not counts of independent ligand-binding experiments. The comparative family gap inventory distinguishes absence of recorded experimental structural evidence from absent biochemical evidence.

Explore domain-level research gaps

Reproducibility and research questions

Original 230 historical mmCIF coordinate files are unchanged. The Phase 6D analysis independently measured 111 ligand-bearing structures and examined 18 representative domains across the family. Native residue identity, experimentally mapped core completeness, source-deposited ligand geometry and literature biochemical evidence remain separately sourced.