STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Phase 6D · Source-verified experimental structures

Comparative binding sites

Compare original deposited PWWP recognition environments across protein domains. Source-qualified ligand instances, evolutionary residue correspondence, local geometry and biochemical evidence retain separate meanings.

Download science summary
283Calculated deposited research-ligand instances
254Strict within-entry observation groups
49Qualified geometric archetypes
11617Qualified representative comparisons

39 evolutionary instances · 18 experimental representatives

Choose two experimentally represented domains

All source-qualified ligand instances

Inspect deposited environments

Clear

176 matching deposited instances; results are separated by experimental chain and exact ligand instance. Select a site to inspect original coordinates, mapped residues, local chemistry and geometric limitations.

DepositionMapped PWWP domainDeposited ligandLocal 5 Å contactsCore qualityArchetypeDetail
7HGP · AUP:Q7Z4V5:PWWP1I8G80 incomplete side chainsARC-3984f43d3854Inspect evidence
7HGQ · AUP:Q7Z4V5:PWWP1K2S20 incomplete side chainsARC-67e60e5fe6daInspect evidence
7HGQ · BUP:Q7Z4V5:PWWP1K2S80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGR · AUP:Q7Z4V5:PWWP1A1AM620 incomplete side chainsUnqualifiedInspect evidence
7HGR · BUP:Q7Z4V5:PWWP1A1AM680 incomplete side chainsARC-3984f43d3854Inspect evidence
7HGR · CUP:Q7Z4V5:PWWP1A1AM680 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGS · AUP:Q7Z4V5:PWWP1A1AMX20 incomplete side chainsUnqualifiedInspect evidence
7HGS · BUP:Q7Z4V5:PWWP1A1AMX80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGT · AUP:Q7Z4V5:PWWP1A1A3R20 incomplete side chainsUnqualifiedInspect evidence
7HGT · BUP:Q7Z4V5:PWWP1A1A3R100 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGT · CUP:Q7Z4V5:PWWP1A1A3R80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGU · AUP:Q7Z4V5:PWWP1VVJ20 incomplete side chainsARC-2e30f7281fd0Inspect evidence
7HGU · BUP:Q7Z4V5:PWWP1VVJ60 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGV · AUP:Q7Z4V5:PWWP1A1A3380 incomplete side chainsARC-3984f43d3854Inspect evidence
7HGV · AUP:Q7Z4V5:PWWP1A1A3320 incomplete side chainsUnqualifiedInspect evidence
7HGV · BUP:Q7Z4V5:PWWP1A1A3380 incomplete side chainsARC-3984f43d3854Inspect evidence
7HGV · CUP:Q7Z4V5:PWWP1A1A3380 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGW · AUP:Q7Z4V5:PWWP1A1A3220 incomplete side chainsARC-beaa5c5bf980Inspect evidence
7HGW · BUP:Q7Z4V5:PWWP1A1A32110 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGX · AUP:Q7Z4V5:PWWP1A1A3120 incomplete side chainsUnqualifiedInspect evidence
7HGX · BUP:Q7Z4V5:PWWP1A1A3180 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HGX · CUP:Q7Z4V5:PWWP1A1A3180 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HGY · AUP:Q7Z4V5:PWWP1UVA20 incomplete side chainsARC-8e6802e1df65Inspect evidence
7HGY · BUP:Q7Z4V5:PWWP1UVA80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HGZ · AUP:Q7Z4V5:PWWP1NYV80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HH0 · AUP:Q7Z4V5:PWWP1RYP20 incomplete side chainsUnqualifiedInspect evidence
7HH0 · BUP:Q7Z4V5:PWWP1RYP80 incomplete side chainsARC-3984f43d3854Inspect evidence
7HH1 · AUP:Q7Z4V5:PWWP1VVG20 incomplete side chainsARC-e46b4e907af5Inspect evidence
7HH1 · BUP:Q7Z4V5:PWWP1VVG80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HH2 · CUP:Q7Z4V5:PWWP1A1AKB80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HH3 · AUP:Q7Z4V5:PWWP1A1A3X20 incomplete side chainsARC-96b8854f172cInspect evidence
7HH3 · BUP:Q7Z4V5:PWWP1A1A3X80 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HH4 · AUP:Q7Z4V5:PWWP1A1A3980 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HH4 · AUP:Q7Z4V5:PWWP1W0J10 incomplete side chainsARC-0ef5177b61f8Inspect evidence
7HH4 · BUP:Q7Z4V5:PWWP1W0J60 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HH4 · CUP:Q7Z4V5:PWWP1W0J80 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HH5 · AUP:Q7Z4V5:PWWP1WO780 incomplete side chainsARC-3984f43d3854Inspect evidence
7HH5 · CUP:Q7Z4V5:PWWP1WO780 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HH6 · AUP:Q7Z4V5:PWWP1UUY20 incomplete side chainsUnqualifiedInspect evidence
7HH6 · BUP:Q7Z4V5:PWWP1UUY80 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HH7 · AUP:Q7Z4V5:PWWP1LJR20 incomplete side chainsUnqualifiedInspect evidence
7HH7 · BUP:Q7Z4V5:PWWP1LJR70 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HH8 · AUP:Q7Z4V5:PWWP1KF880 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HH9 · AUP:Q7Z4V5:PWWP1A1A3W20 incomplete side chainsUnqualifiedInspect evidence
7HH9 · BUP:Q7Z4V5:PWWP1A1A3W80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HH9 · CUP:Q7Z4V5:PWWP1A1A3W80 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HHA · AUP:Q7Z4V5:PWWP1TE080 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHA · AUP:Q7Z4V5:PWWP1TE020 incomplete side chainsARC-ff6c3a4a5bb1Inspect evidence
7HHA · BUP:Q7Z4V5:PWWP1TE080 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHA · CUP:Q7Z4V5:PWWP1TE080 incomplete side chainsARC-76dc2cbec63aInspect evidence
7HHB · AUP:Q7Z4V5:PWWP1A1A3U20 incomplete side chainsUnqualifiedInspect evidence
7HHB · BUP:Q7Z4V5:PWWP1A1A3U80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHB · CUP:Q7Z4V5:PWWP1A1A3U80 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHC · AUP:Q7Z4V5:PWWP1SYX20 incomplete side chainsARC-06088c103390Inspect evidence
7HHC · BUP:Q7Z4V5:PWWP1SYX60 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHC · CUP:Q7Z4V5:PWWP1SYX70 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHD · AUP:Q7Z4V5:PWWP1A1A3V30 incomplete side chainsARC-f06e9fa3c694Inspect evidence
7HHD · BUP:Q7Z4V5:PWWP1A1A3V60 incomplete side chainsARC-a282f44e9813Inspect evidence
7HHE · AUP:Q7Z4V5:PWWP1A1A3880 incomplete side chainsARC-2d1bd36d0095Inspect evidence
7HHE · AUP:Q7Z4V5:PWWP1A1A3820 incomplete side chainsUnqualifiedInspect evidence

Family-wide research evidence

The frozen 39-instance PWWP evolutionary alignment contains 27 domains with at least one observed experimental core and six domains with source-classified deposited research-ligand sites. These totals are not counts of independent ligand-binding experiments. The comparative family gap inventory distinguishes absence of recorded experimental structural evidence from absent biochemical evidence.

Explore domain-level research gaps

Reproducibility and research questions

Original 230 historical mmCIF coordinate files are unchanged. The Phase 6D analysis independently measured 111 ligand-bearing structures and examined 18 representative domains across the family. Native residue identity, experimentally mapped core completeness, source-deposited ligand geometry and literature biochemical evidence remain separately sourced.