STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Published assay observation

MRT866 and NSD2

PWWP:ASSAY:0003

direct binding affinity

Reported observation

SPR Kd

= 349.0 nM ± 19.0

Reported uncertainty; definition uncurated

Target domain
UP:O96028:PWWP1
Assay construct
Uncurated–Uncurated
Identity scope
exact single CCD identity

Evidence provenance

Primary source

PMID:34782742

Results: Discovery of a potent ligand targeting NSD2-PWWP1

Verification scope
Phase 3 primary full-text Methods, Results and figure legends through official NCBI BioC; actual publisher supplement; assay-specific scope retained
Assay and verification JSON

Field-level provenance

Assay conditions and source verification

Missing information is not proof of absence. The v1.2 source overlay separates not reported in inspected material, not inspected, not transcribed and not applicable.

FieldValue and source stateSource and interpretation
construct boundsnot reportedSV02A · Results MRT866 and general SPR Methods

MRT866 349 ± 19 nM is explicitly reported; assay-specific mapping of this measurement to a construct/protocol is not explicit in the inspected paragraphs. The method names UNC6934 and UNC7145; their conditions are not automatically transferred.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

tagsnot reportedSV02A · Results MRT866 and general SPR Methods

MRT866 349 ± 19 nM is explicitly reported; assay-specific mapping of this measurement to a construct/protocol is not explicit in the inspected paragraphs. The method names UNC6934 and UNC7145; their conditions are not automatically transferred.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

engineered mutationsnot reportedSV02A · Results MRT866 and general SPR Methods

MRT866 349 ± 19 nM is explicitly reported; assay-specific mapping of this measurement to a construct/protocol is not explicit in the inspected paragraphs. The method names UNC6934 and UNC7145; their conditions are not automatically transferred.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

assay typeSPR Kd
verified
SV02A · Results and assay-specific Methods
Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

temperature Cnot reportedSV02A · Results MRT866 and general SPR Methods

MRT866 349 ± 19 nM is explicitly reported; assay-specific mapping of this measurement to a construct/protocol is not explicit in the inspected paragraphs. The method names UNC6934 and UNC7145; their conditions are not automatically transferred.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

buffernot reportedSV02A · Results MRT866 and general SPR Methods

MRT866 349 ± 19 nM is explicitly reported; assay-specific mapping of this measurement to a construct/protocol is not explicit in the inspected paragraphs. The method names UNC6934 and UNC7145; their conditions are not automatically transferred.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

pHnot reportedSV02A · Results MRT866 and general SPR Methods

MRT866 349 ± 19 nM is explicitly reported; assay-specific mapping of this measurement to a construct/protocol is not explicit in the inspected paragraphs. The method names UNC6934 and UNC7145; their conditions are not automatically transferred.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

DMSO percentnot reportedSV02A · Results MRT866 and general SPR Methods

MRT866 349 ± 19 nM is explicitly reported; assay-specific mapping of this measurement to a construct/protocol is not explicit in the inspected paragraphs. The method names UNC6934 and UNC7145; their conditions are not automatically transferred.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

unitsnM
verified
SV02A · Results and assay-specific Methods
Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

measurement uncertainty19.0
verified
SV02A · Results and assay-specific Methods

Reported plus/minus magnitude, in the units of the assay result.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

uncertainty typenot reportedSV02A · Results MRT866
Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

replicate definitionnot reportedSV02A · Results MRT866 and general SPR Methods

MRT866 349 ± 19 nM is explicitly reported; assay-specific mapping of this measurement to a construct/protocol is not explicit in the inspected paragraphs. The method names UNC6934 and UNC7145; their conditions are not automatically transferred.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

measurement entityPREP:MRT866
verified
SV02A · Results and assay-specific Methods

The reported result belongs to this experimental preparation and construct; structural CCD membership alone cannot transfer affinity.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

concentration rangenot inspected

Outside the source scope inspected for this field; no absence claim.

incubation and flownot reportedSV02A · Results MRT866 and general SPR Methods

MRT866 349 ± 19 nM is explicitly reported; assay-specific mapping of this measurement to a construct/protocol is not explicit in the inspected paragraphs. The method names UNC6934 and UNC7145; their conditions are not automatically transferred.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

fittingnot reportedSV02A · Results MRT866 and general SPR Methods

MRT866 349 ± 19 nM is explicitly reported; assay-specific mapping of this measurement to a construct/protocol is not explicit in the inspected paragraphs. The method names UNC6934 and UNC7145; their conditions are not automatically transferred.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

negative observationnot applicableSV02A · Results and assay-specific Methods
Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

identity assignmentexact_single_CCD_identity
verified
SV02A · Chemical series Results and existing CCD mapping

No change to existing identity node or preparation ID.

Inspected source scope

Primary author manuscript full text retrieved; relevant Methods, Results and figure legends inspected

Structure → Component → Assay

Exact identity contact links

32 contact links

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7LMT Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed

7MDN Y6V

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed