STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Measured experimental coordinates · Phase 6C.1

9XYC · PSIP1 PWWP1

Source chain K, canonical annotation-core residues 1–64. ELECTRON MICROSCOPY · reported 3.5 Å. Original-coordinate SHA-256: e99136caa5ab3f02f9aee8cb43c01999133a63a2fd5b7e150f827f06d67580eb.

58Core residues with observed coordinates (64 annotated)
0Missing heavy side-chain atoms in observed core
1Experimental models evaluated
0Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

ModelCore residues observedMissing backboneMissing side-chain (union)Missing side-chain (consistent conformer)Partial occupancy residuesUnassessable chemistry
15810000

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity positionComponentObservedMissing backboneMissing side-chain (union)Missing side-chain (consistent)Alt & occupancy
2 / 4THRYes————; occupancy ≥ 1.0
3 / 5ARGYes————; occupancy ≥ 1.0
4 / 6ASPYes————; occupancy ≥ 1.0
5 / 7PHEYes————; occupancy ≥ 1.0
6 / 8LYSYes————; occupancy ≥ 1.0
7 / 9PROYes————; occupancy ≥ 1.0
8 / 10GLYYes————; occupancy ≥ 1.0
9 / 11ASPYes————; occupancy ≥ 1.0
10 / 12LEUYes————; occupancy ≥ 1.0
11 / 13ILEYes————; occupancy ≥ 1.0
12 / 14PHEYes————; occupancy ≥ 1.0
13 / 15ALAYes————; occupancy ≥ 1.0
14 / 16LYSYes————; occupancy ≥ 1.0
15 / 17METYes————; occupancy ≥ 1.0
16 / 18LYSYes————; occupancy ≥ 1.0
17 / 19GLYYes————; occupancy ≥ 1.0
18 / 20TYRYes————; occupancy ≥ 1.0
19 / 21PROYes————; occupancy ≥ 1.0
20 / 22HISYes————; occupancy ≥ 1.0
21 / 23TRPYes————; occupancy ≥ 1.0
22 / 24PROYes————; occupancy ≥ 1.0
23 / 25ALAYes————; occupancy ≥ 1.0
24 / 26ARGYes————; occupancy ≥ 1.0
25 / 27VALYes————; occupancy ≥ 1.0
26 / 28ASPYes————; occupancy ≥ 1.0
27 / 29GLUYes————; occupancy ≥ 1.0
28 / 30VALYes————; occupancy ≥ 1.0
29 / 31PROYesO———; occupancy ≥ 1.0
30 / 32ASPNo coordinates————
31 / 33GLYNo coordinates————
32 / 34ALANo coordinates————
33 / 35VALNo coordinates————
34 / 36LYSNo coordinates————
35 / 37PROYes————; occupancy ≥ 1.0
36 / 38PROYes————; occupancy ≥ 1.0
37 / 39THRYes————; occupancy ≥ 1.0
38 / 40ASNYes————; occupancy ≥ 1.0
39 / 41LYSYes————; occupancy ≥ 1.0
40 / 42LEUYes————; occupancy ≥ 1.0
41 / 43PROYes————; occupancy ≥ 1.0
42 / 44ILEYes————; occupancy ≥ 1.0
43 / 45PHEYes————; occupancy ≥ 1.0
44 / 46PHEYes————; occupancy ≥ 1.0
45 / 47PHEYes————; occupancy ≥ 1.0
46 / 48GLYYes————; occupancy ≥ 1.0
47 / 49THRYes————; occupancy ≥ 1.0
48 / 50HISYes————; occupancy ≥ 1.0
49 / 51GLUYes————; occupancy ≥ 1.0
50 / 52THRYes————; occupancy ≥ 1.0
51 / 53ALAYes————; occupancy ≥ 1.0
52 / 54PHEYes————; occupancy ≥ 1.0
53 / 55LEUYes————; occupancy ≥ 1.0
54 / 56GLYYes————; occupancy ≥ 1.0
55 / 57PROYes————; occupancy ≥ 1.0
56 / 58LYSYes————; occupancy ≥ 1.0
57 / 59ASPYes————; occupancy ≥ 1.0
58 / 60ILEYes————; occupancy ≥ 1.0
59 / 61PHEYes————; occupancy ≥ 1.0
60 / 62PROYes————; occupancy ≥ 1.0
61 / 63TYRYes————; occupancy ≥ 1.0
62 / 64SERYes————; occupancy ≥ 1.0
63 / 65GLUYes————; occupancy ≥ 1.0
64 / 66ASNYes————; occupancy ≥ 1.0

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