STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Measured experimental coordinates · Phase 6C.1

9T2G · ZMYND8 PWWP1

Source chain A, canonical annotation-core residues 277–327. X-RAY DIFFRACTION · reported 1.66 Å. Original-coordinate SHA-256: ac4aaab0ebea6a86cb100a8a5883896f14e13137282684c6d4c91b17fba43c4b.

51Core residues with observed coordinates (51 annotated)
0Missing heavy side-chain atoms in observed core
1Experimental models evaluated
0Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

ModelCore residues observedMissing backboneMissing side-chain (union)Missing side-chain (consistent conformer)Partial occupancy residuesUnassessable chemistry
15100010

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity positionComponentObservedMissing backboneMissing side-chain (union)Missing side-chain (consistent)Alt & occupancy
277 / 197PROYes————; occupancy ≥ 1.0
278 / 198HISYes————; occupancy ≥ 1.0
279 / 199PROYes————; occupancy ≥ 1.0
280 / 200LEUYes————; occupancy ≥ 1.0
281 / 201VALYes————; occupancy ≥ 1.0
282 / 202TRPYes————; occupancy ≥ 1.0
283 / 203ALAYes————; occupancy ≥ 1.0
284 / 204LYSYes————; occupancy ≥ 1.0
285 / 205LEUYes————; occupancy ≥ 1.0
286 / 206LYSYes————; occupancy ≥ 1.0
287 / 207GLYYes————; occupancy ≥ 1.0
288 / 208PHEYes————; occupancy ≥ 1.0
289 / 209PROYes————; occupancy ≥ 1.0
290 / 210PHEYes————; occupancy ≥ 1.0
291 / 211TRPYes————; occupancy ≥ 1.0
292 / 212PROYes————; occupancy ≥ 1.0
293 / 213ALAYes————; occupancy ≥ 1.0
294 / 214LYSYes————; occupancy ≥ 1.0
295 / 215ALAYes————; occupancy ≥ 1.0
296 / 216LEUYes————; occupancy ≥ 1.0
297 / 217ARGYes————; occupancy ≥ 1.0
298 / 218ASPYes————; occupancy ≥ 1.0
299 / 219LYSYes————; occupancy ≥ 1.0
300 / 220ASPYes————; occupancy ≥ 1.0
301 / 221GLYYes————; occupancy ≥ 1.0
302 / 222GLNYes———A, B; occupancy ≥ 0.5
303 / 223VALYes————; occupancy ≥ 1.0
304 / 224ASPYes————; occupancy ≥ 1.0
305 / 225ALAYes————; occupancy ≥ 1.0
306 / 226ARGYes————; occupancy ≥ 1.0
307 / 227PHEYes————; occupancy ≥ 1.0
308 / 228PHEYes————; occupancy ≥ 1.0
309 / 229GLYYes————; occupancy ≥ 1.0
310 / 230GLNYes————; occupancy ≥ 1.0
311 / 231HISYes————; occupancy ≥ 1.0
312 / 232ASPYes————; occupancy ≥ 1.0
313 / 233ARGYes————; occupancy ≥ 1.0
314 / 234ALAYes————; occupancy ≥ 1.0
315 / 235TRPYes————; occupancy ≥ 1.0
316 / 236VALYes————; occupancy ≥ 1.0
317 / 237PROYes————; occupancy ≥ 1.0
318 / 238ILEYes————; occupancy ≥ 1.0
319 / 239ASNYes————; occupancy ≥ 1.0
320 / 240ASNYes————; occupancy ≥ 1.0
321 / 241CYSYes————; occupancy ≥ 1.0
322 / 242TYRYes————; occupancy ≥ 1.0
323 / 243LEUYes————; occupancy ≥ 1.0
324 / 244METYes————; occupancy ≥ 1.0
325 / 245SERYes————; occupancy ≥ 1.0
326 / 246LYSYes————; occupancy ≥ 1.0
327 / 247GLUYes————; occupancy ≥ 1.0

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