STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Measured experimental coordinates · Phase 6C.1

8QZM · DNMT3A PWWP1

Source chain K, canonical annotation-core residues 292–350. ELECTRON MICROSCOPY · reported 3.1 Å. Original-coordinate SHA-256: df338d612b7680fe4107c27eea6fcefaa8cdfa4e191d355742c1661eab55c7fe.

0Core residues with observed coordinates (59 annotated)
0Missing heavy side-chain atoms in observed core
1Experimental models evaluated
0Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

ModelCore residues observedMissing backboneMissing side-chain (union)Missing side-chain (consistent conformer)Partial occupancy residuesUnassessable chemistry
1000000

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity positionComponentObservedMissing backboneMissing side-chain (union)Missing side-chain (consistent)Alt & occupancy
292 / 295ILENo coordinates————
293 / 296GLYNo coordinates————
294 / 297GLUNo coordinates————
295 / 298LEUNo coordinates————
296 / 299VALNo coordinates————
297 / 300TRPNo coordinates————
298 / 301GLYNo coordinates————
299 / 302LYSNo coordinates————
300 / 303LEUNo coordinates————
301 / 304ARGNo coordinates————
302 / 305GLYNo coordinates————
303 / 306PHENo coordinates————
304 / 307SERNo coordinates————
305 / 308TRPNo coordinates————
306 / 309TRPNo coordinates————
307 / 310PRONo coordinates————
308 / 311GLYNo coordinates————
309 / 312ARGNo coordinates————
310 / 313ILENo coordinates————
311 / 314VALNo coordinates————
312 / 315SERNo coordinates————
313 / 316TRPNo coordinates————
314 / 317TRPNo coordinates————
315 / 318METNo coordinates————
316 / 319THRNo coordinates————
317 / 320GLYNo coordinates————
318 / 321ARGNo coordinates————
319 / 322SERNo coordinates————
320 / 323ARGNo coordinates————
321 / 324ALANo coordinates————
322 / 325ALANo coordinates————
323 / 326GLUNo coordinates————
324 / 327GLYNo coordinates————
325 / 328THRNo coordinates————
326 / 329ARGNo coordinates————
327 / 330TRPNo coordinates————
328 / 331VALNo coordinates————
329 / 332METNo coordinates————
330 / 333TRPNo coordinates————
331 / 334PHENo coordinates————
332 / 335GLYNo coordinates————
333 / 336ASPNo coordinates————
334 / 337GLYNo coordinates————
335 / 338LYSNo coordinates————
336 / 339PHENo coordinates————
337 / 340SERNo coordinates————
338 / 341VALNo coordinates————
339 / 342VALNo coordinates————
340 / 343CYSNo coordinates————
341 / 344VALNo coordinates————
342 / 345GLUNo coordinates————
343 / 346LYSNo coordinates————
344 / 347LEUNo coordinates————
345 / 348METNo coordinates————
346 / 349PRONo coordinates————
347 / 350LEUNo coordinates————
348 / 351SERNo coordinates————
349 / 352SERNo coordinates————
350 / 353PHENo coordinates————

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