Measured experimental coordinates · Phase 6C.1
8EIH · DNMT3B PWWP1
Source chain E, canonical annotation-core residues 225–283. ELECTRON MICROSCOPY · reported 3.04 Å. Original-coordinate SHA-256: 33307be1ba7a4c8aac3acd9120bc3d5937cd818c68009215b2bca47ef961b29a.
Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry
Model-aware structural assessment
Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.
| Model | Core residues observed | Missing backbone | Missing side-chain (union) | Missing side-chain (consistent conformer) | Partial occupancy residues | Unassessable chemistry |
|---|---|---|---|---|---|---|
| 1 | 59 | 0 | 41 | 41 | 0 | 0 |
Experimental ligand environments
Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.
No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.
Residue-level coordinate and atom completeness
"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.
| Canonical / entity position | Component | Observed | Missing backbone | Missing side-chain (union) | Missing side-chain (consistent) | Alt & occupancy |
|---|---|---|---|---|---|---|
| 225 / 22 | ILE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 226 / 23 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 227 / 24 | ASP | Yes | — | CG, OD1, OD2 | CG, OD1, OD2 | —; occupancy ≥ 1.0 |
| 228 / 25 | LEU | Yes | — | CD1, CD2, CG | CD1, CD2, CG | —; occupancy ≥ 1.0 |
| 229 / 26 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 230 / 27 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 231 / 28 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 232 / 29 | LYS | Yes | — | CD, CE, CG, NZ | CD, CE, CG, NZ | —; occupancy ≥ 1.0 |
| 233 / 30 | ILE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 234 / 31 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 235 / 32 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 236 / 33 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 237 / 34 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 238 / 35 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 239 / 36 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 240 / 37 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 241 / 38 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 242 / 39 | MET | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 243 / 40 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 244 / 41 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 245 / 42 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 246 / 43 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 247 / 44 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 248 / 45 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 249 / 46 | THR | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 250 / 47 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 251 / 48 | LYS | Yes | — | CD, CE, CG, NZ | CD, CE, CG, NZ | —; occupancy ≥ 1.0 |
| 252 / 49 | ARG | Yes | — | CD, CG, CZ, NE, NH1, NH2 | CD, CG, CZ, NE, NH1, NH2 | —; occupancy ≥ 1.0 |
| 253 / 50 | GLN | Yes | — | CD, CG, NE2, OE1 | CD, CG, NE2, OE1 | —; occupancy ≥ 1.0 |
| 254 / 51 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 255 / 52 | MET | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 256 / 53 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 257 / 54 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 258 / 55 | MET | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 259 / 56 | ARG | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 260 / 57 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 261 / 58 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 262 / 59 | GLN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 263 / 60 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 264 / 61 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 265 / 62 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 266 / 63 | ASP | Yes | — | CG, OD1, OD2 | CG, OD1, OD2 | —; occupancy ≥ 1.0 |
| 267 / 64 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 268 / 65 | LYS | Yes | — | CD, CE, CG, NZ | CD, CE, CG, NZ | —; occupancy ≥ 1.0 |
| 269 / 66 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 270 / 67 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 271 / 68 | GLU | Yes | — | CD, CG, OE1, OE2 | CD, CG, OE1, OE2 | —; occupancy ≥ 1.0 |
| 272 / 69 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 273 / 70 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 274 / 71 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 275 / 72 | ASP | Yes | — | CG, OD1, OD2 | CG, OD1, OD2 | —; occupancy ≥ 1.0 |
| 276 / 73 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 277 / 74 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 278 / 75 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 279 / 76 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 280 / 77 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 281 / 78 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 282 / 79 | LEU | Yes | — | CD1, CD2, CG | CD1, CD2, CG | —; occupancy ≥ 1.0 |
| 283 / 80 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
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