STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Measured experimental coordinates · Phase 6C.1

7V8N · ARID4A PWWP1

Source chain A, canonical annotation-core residues 170–262. X-RAY DIFFRACTION · reported 2.05 Å. Original-coordinate SHA-256: d33ca5e9bcd7721563170a9c48be248295c3778879e47ca008908a349a8ef1ef.

93Core residues with observed coordinates (93 annotated)
14Missing heavy side-chain atoms in observed core
1Experimental models evaluated
0Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

ModelCore residues observedMissing backboneMissing side-chain (union)Missing side-chain (consistent conformer)Partial occupancy residuesUnassessable chemistry
1930141400

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity positionComponentObservedMissing backboneMissing side-chain (union)Missing side-chain (consistent)Alt & occupancy
170 / 6LEUYes————; occupancy ≥ 1.0
171 / 7ASNYes————; occupancy ≥ 1.0
172 / 8ASPYes————; occupancy ≥ 1.0
173 / 9GLUYes————; occupancy ≥ 1.0
174 / 10LEUYes————; occupancy ≥ 1.0
175 / 11LEUYes————; occupancy ≥ 1.0
176 / 12GLYYes————; occupancy ≥ 1.0
177 / 13LYSYes————; occupancy ≥ 1.0
178 / 14VALYes————; occupancy ≥ 1.0
179 / 15VALYes————; occupancy ≥ 1.0
180 / 16SERYes————; occupancy ≥ 1.0
181 / 17VALYes————; occupancy ≥ 1.0
182 / 18VALYes————; occupancy ≥ 1.0
183 / 19SERYes————; occupancy ≥ 1.0
184 / 20ALAYes————; occupancy ≥ 1.0
185 / 21THRYes————; occupancy ≥ 1.0
186 / 22GLUYes————; occupancy ≥ 1.0
187 / 23ARGYes—CD, CG, CZ, NE, NH1, NH2CD, CG, CZ, NE, NH1, NH2—; occupancy ≥ 1.0
188 / 24THRYes————; occupancy ≥ 1.0
189 / 25GLUYes————; occupancy ≥ 1.0
190 / 26TRPYes————; occupancy ≥ 1.0
191 / 27TYRYes————; occupancy ≥ 1.0
192 / 28PROYes————; occupancy ≥ 1.0
193 / 29ALAYes————; occupancy ≥ 1.0
194 / 30LEUYes————; occupancy ≥ 1.0
195 / 31VALYes————; occupancy ≥ 1.0
196 / 32ILEYes————; occupancy ≥ 1.0
197 / 33SERYes————; occupancy ≥ 1.0
198 / 34PROYes————; occupancy ≥ 1.0
199 / 35SERYes————; occupancy ≥ 1.0
200 / 36CYSYes————; occupancy ≥ 1.0
201 / 37ASNYes————; occupancy ≥ 1.0
202 / 38ASPYes————; occupancy ≥ 1.0
203 / 39ASPYes————; occupancy ≥ 1.0
204 / 40ILEYes————; occupancy ≥ 1.0
205 / 41THRYes————; occupancy ≥ 1.0
206 / 42VALYes————; occupancy ≥ 1.0
207 / 43LYSYes————; occupancy ≥ 1.0
208 / 44LYSYes—CD, CE, CG, NZCD, CE, CG, NZ—; occupancy ≥ 1.0
209 / 45ASPYes————; occupancy ≥ 1.0
210 / 46GLNYes————; occupancy ≥ 1.0
211 / 47CYSYes————; occupancy ≥ 1.0
212 / 48LEUYes————; occupancy ≥ 1.0
213 / 49VALYes————; occupancy ≥ 1.0
214 / 50ARGYes————; occupancy ≥ 1.0
215 / 51SERYes————; occupancy ≥ 1.0
216 / 52PHEYes————; occupancy ≥ 1.0
217 / 53ILEYes————; occupancy ≥ 1.0
218 / 54ASPYes————; occupancy ≥ 1.0
219 / 55SERYes————; occupancy ≥ 1.0
220 / 56LYSYes————; occupancy ≥ 1.0
221 / 57PHEYes————; occupancy ≥ 1.0
222 / 58TYRYes————; occupancy ≥ 1.0
223 / 59SERYes————; occupancy ≥ 1.0
224 / 60ILEYes————; occupancy ≥ 1.0
225 / 61ALAYes————; occupancy ≥ 1.0
226 / 62ARGYes————; occupancy ≥ 1.0
227 / 63LYSYes————; occupancy ≥ 1.0
228 / 64ASPYes————; occupancy ≥ 1.0
229 / 65ILEYes————; occupancy ≥ 1.0
230 / 66LYSYes————; occupancy ≥ 1.0
231 / 67GLUYes————; occupancy ≥ 1.0
232 / 68VALYes————; occupancy ≥ 1.0
233 / 69ASPYes————; occupancy ≥ 1.0
234 / 70ILEYes————; occupancy ≥ 1.0
235 / 71LEUYes————; occupancy ≥ 1.0
236 / 72ASNYes————; occupancy ≥ 1.0
237 / 73LEUYes————; occupancy ≥ 1.0
238 / 74PROYes————; occupancy ≥ 1.0
239 / 75GLUYes—CD, CG, OE1, OE2CD, CG, OE1, OE2—; occupancy ≥ 1.0
240 / 76SERYes————; occupancy ≥ 1.0
241 / 77GLUYes————; occupancy ≥ 1.0
242 / 78LEUYes————; occupancy ≥ 1.0
243 / 79SERYes————; occupancy ≥ 1.0
244 / 80THRYes————; occupancy ≥ 1.0
245 / 81LYSYes————; occupancy ≥ 1.0
246 / 82PROYes————; occupancy ≥ 1.0
247 / 83GLYYes————; occupancy ≥ 1.0
248 / 84LEUYes————; occupancy ≥ 1.0
249 / 85GLNYes————; occupancy ≥ 1.0
250 / 86LYSYes————; occupancy ≥ 1.0
251 / 87ALAYes————; occupancy ≥ 1.0
252 / 88SERYes————; occupancy ≥ 1.0
253 / 89ILEYes————; occupancy ≥ 1.0
254 / 90PHEYes————; occupancy ≥ 1.0
255 / 91LEUYes————; occupancy ≥ 1.0
256 / 92LYSYes————; occupancy ≥ 1.0
257 / 93THRYes————; occupancy ≥ 1.0
258 / 94ARGYes————; occupancy ≥ 1.0
259 / 95VALYes————; occupancy ≥ 1.0
260 / 96VALYes————; occupancy ≥ 1.0
261 / 97PROYes————; occupancy ≥ 1.0
262 / 98ASPYes————; occupancy ≥ 1.0

Export every residue · Export atom contacts · Export ensemble records · Scientific provenance.