STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Measured experimental coordinates · Phase 6C.1

7LH9 · BRD1 PWWP1

Source chain D, canonical annotation-core residues 929–1012. X-RAY DIFFRACTION · reported 2.6 Å. Original-coordinate SHA-256: 16bc43072d6966ab65ffb692c573a44ffac1eb40f56d82639543cb19d9bceeb1.

81Core residues with observed coordinates (84 annotated)
53Missing heavy side-chain atoms in observed core
1Experimental models evaluated
0Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

ModelCore residues observedMissing backboneMissing side-chain (union)Missing side-chain (consistent conformer)Partial occupancy residuesUnassessable chemistry
1810535300

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity positionComponentObservedMissing backboneMissing side-chain (union)Missing side-chain (consistent)Alt & occupancy
929 / 6PROYes————; occupancy ≥ 1.0
930 / 7LEUYes————; occupancy ≥ 1.0
931 / 8LYSYes—CD, CE, NZCD, CE, NZ—; occupancy ≥ 1.0
932 / 9VALYes————; occupancy ≥ 1.0
933 / 10VALYes————; occupancy ≥ 1.0
934 / 11TRPYes————; occupancy ≥ 1.0
935 / 12ALAYes————; occupancy ≥ 1.0
936 / 13LYSYes—NZNZ—; occupancy ≥ 1.0
937 / 14CYSYes————; occupancy ≥ 1.0
938 / 15SERYes—OGOG—; occupancy ≥ 1.0
939 / 16GLYYes————; occupancy ≥ 1.0
940 / 17TYRYes————; occupancy ≥ 1.0
941 / 18PROYes————; occupancy ≥ 1.0
942 / 19SERYes————; occupancy ≥ 1.0
943 / 20TYRYes————; occupancy ≥ 1.0
944 / 21PROYes————; occupancy ≥ 1.0
945 / 22ALAYes————; occupancy ≥ 1.0
946 / 23LEUYes————; occupancy ≥ 1.0
947 / 24ILEYes————; occupancy ≥ 1.0
948 / 25ILEYes————; occupancy ≥ 1.0
949 / 26ASPYes————; occupancy ≥ 1.0
950 / 27PROYes————; occupancy ≥ 1.0
951 / 28LYSYes—CD, CE, CG, NZCD, CE, CG, NZ—; occupancy ≥ 1.0
952 / 29METYes————; occupancy ≥ 1.0
953 / 30PROYes————; occupancy ≥ 1.0
954 / 31ARGYes————; occupancy ≥ 1.0
955 / 32VALYes————; occupancy ≥ 1.0
956 / 33PROYes————; occupancy ≥ 1.0
957 / 34GLYYes————; occupancy ≥ 1.0
958 / 35HISNo coordinates————
959 / 36HISNo coordinates————
960 / 37ASNNo coordinates————
961 / 38GLYYes————; occupancy ≥ 1.0
962 / 39VALYes—CG1, CG2CG1, CG2—; occupancy ≥ 1.0
963 / 40THRYes————; occupancy ≥ 1.0
964 / 41ILEYes—CD1CD1—; occupancy ≥ 1.0
965 / 42PROYes————; occupancy ≥ 1.0
966 / 43ALAYes————; occupancy ≥ 1.0
967 / 44PROYes————; occupancy ≥ 1.0
968 / 45PROYes————; occupancy ≥ 1.0
969 / 46LEUYes—CD1, CD2CD1, CD2—; occupancy ≥ 1.0
970 / 47ASPYes—OD1, OD2OD1, OD2—; occupancy ≥ 1.0
971 / 48VALYes————; occupancy ≥ 1.0
972 / 49LEUYes————; occupancy ≥ 1.0
973 / 50LYSYes—CD, CE, CG, NZCD, CE, CG, NZ—; occupancy ≥ 1.0
974 / 51ILEYes—CD1CD1—; occupancy ≥ 1.0
975 / 52GLYYes————; occupancy ≥ 1.0
976 / 53GLUYes————; occupancy ≥ 1.0
977 / 54HISYes—CD2, CE1, CG, ND1, NE2CD2, CE1, CG, ND1, NE2—; occupancy ≥ 1.0
978 / 55METYes————; occupancy ≥ 1.0
979 / 56GLNYes————; occupancy ≥ 1.0
980 / 57THRYes————; occupancy ≥ 1.0
981 / 58LYSYes—CD, CE, CG, NZCD, CE, CG, NZ—; occupancy ≥ 1.0
982 / 59SERYes————; occupancy ≥ 1.0
983 / 60ASPYes—CG, OD1, OD2CG, OD1, OD2—; occupancy ≥ 1.0
984 / 61GLUYes————; occupancy ≥ 1.0
985 / 62LYSYes—CD, CE, NZCD, CE, NZ—; occupancy ≥ 1.0
986 / 63LEUYes————; occupancy ≥ 1.0
987 / 64PHEYes————; occupancy ≥ 1.0
988 / 65LEUYes————; occupancy ≥ 1.0
989 / 66VALYes————; occupancy ≥ 1.0
990 / 67LEUYes————; occupancy ≥ 1.0
991 / 68PHEYes————; occupancy ≥ 1.0
992 / 69PHEYes————; occupancy ≥ 1.0
993 / 70ASPYes————; occupancy ≥ 1.0
994 / 71ASNYes—CG, ND2, OD1CG, ND2, OD1—; occupancy ≥ 1.0
995 / 72LYSYes—CD, CE, CG, NZCD, CE, CG, NZ—; occupancy ≥ 1.0
996 / 73ARGYes—CD, CZ, NE, NH1, NH2CD, CZ, NE, NH1, NH2—; occupancy ≥ 1.0
997 / 74SERYes————; occupancy ≥ 1.0
998 / 75TRPYes————; occupancy ≥ 1.0
999 / 76GLNYes————; occupancy ≥ 1.0
1000 / 77TRPYes————; occupancy ≥ 1.0
1001 / 78LEUYes————; occupancy ≥ 1.0
1002 / 79PROYes————; occupancy ≥ 1.0
1003 / 80LYSYes—CD, CE, NZCD, CE, NZ—; occupancy ≥ 1.0
1004 / 81SERYes————; occupancy ≥ 1.0
1005 / 82LYSYes—NZNZ—; occupancy ≥ 1.0
1006 / 83METYes————; occupancy ≥ 1.0
1007 / 84VALYes————; occupancy ≥ 1.0
1008 / 85PROYes————; occupancy ≥ 1.0
1009 / 86LEUYes————; occupancy ≥ 1.0
1010 / 87GLYYes————; occupancy ≥ 1.0
1011 / 88ILEYes—CD1CD1—; occupancy ≥ 1.0
1012 / 89ASPYes————; occupancy ≥ 1.0

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