Measured experimental coordinates · Phase 6C.1

6XCG · NSD2 PWWP1

Source chain A, canonical annotation-core residues 222–286. X-RAY DIFFRACTION · reported 1.64 Å. Original-coordinate SHA-256: 2c370701c9b83de7ae6137f91d2130519a48c261a93ec5bc480dfcc3bc982200.

65Core residues with observed coordinates (65 annotated)

6Missing heavy side-chain atoms in observed core

1Experimental models evaluated

1Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

Model	Core residues observed	Missing backbone	Missing side-chain (union)	Missing side-chain (consistent conformer)	Partial occupancy residues	Unassessable chemistry
1	65	0	6	6	1	0

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

V01 · calculated observed ligand environment

Deposited instance PDB:6XCG:LIG:D:V01:401:.. Closest calculated PWWP-region atom distance: 2.8613 Å. Five-Å native core contacts: 13; broader-Pfam contacts: 2; source-coordinate model 1.

Limitations: partial occupancy contact atoms; representative alt conformers selected

Canonical residue	Region	Protein atom	Ligand atom	Distance (Å)	Occupancy
228 SER	native annotation core	O	C2	5.5772	1.0 / 1.0
230 VAL	native annotation core	CG1	C4	3.8951	1.0 / 1.0
233 TYR	native annotation core	OH	O	3.3246	1.0 / 1.0
234 PRO	native annotation core	O	C2	5.2443	1.0 / 1.0
236 TRP	native annotation core	CE3	C3	3.5457	1.0 / 1.0
243 ASP	native annotation core	OD2	C12	5.6094	1.0 / 1.0
266 PHE	native annotation core	CB	O2	3.1885	1.0 / 1.0
267 PHE	native annotation core	O	C19	3.3736	1.0 / 1.0
268 GLY	native annotation core	C	O3	3.1722	1.0 / 1.0
269 ASP	native annotation core	N	O3	3.2062	1.0 / 1.0
270 ALA	native annotation core	N	O3	2.8613	1.0 / 1.0
271 PRO	native annotation core	C	O2	4.3291	1.0 / 1.0
272 GLU	native annotation core	CG	C17	3.4275	0.6 / 1.0
273 ARG	native annotation core	O	N1	3.0145	1.0 / 1.0
274 ALA	native annotation core	CB	C9	3.6628	1.0 / 1.0
275 TRP	native annotation core	N	C11	4.5773	1.0 / 1.0
276 ILE	native annotation core	CD1	C6	5.621	1.0 / 1.0
318 LEU	broader pfam outside annotation core	CD2	C22	3.4573	1.0 / 1.0
321 GLN	broader pfam outside annotation core	OE1	N4	2.867	1.0 / 1.0

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity position	Component	Observed	Missing backbone	Missing side-chain (union)	Missing side-chain (consistent)	Alt & occupancy
222 / 13	VAL	Yes	—	—	—	—; occupancy ≥ 1.0
223 / 14	GLY	Yes	—	—	—	—; occupancy ≥ 1.0
224 / 15	ASP	Yes	—	—	—	—; occupancy ≥ 1.0
225 / 16	LEU	Yes	—	—	—	—; occupancy ≥ 1.0
226 / 17	VAL	Yes	—	—	—	—; occupancy ≥ 1.0
227 / 18	TRP	Yes	—	—	—	—; occupancy ≥ 1.0
228 / 19	SER	Yes	—	—	—	—; occupancy ≥ 1.0
229 / 20	LYS	Yes	—	—	—	—; occupancy ≥ 1.0
230 / 21	VAL	Yes	—	—	—	—; occupancy ≥ 1.0
231 / 22	SER	Yes	—	—	—	—; occupancy ≥ 1.0
232 / 23	GLY	Yes	—	—	—	—; occupancy ≥ 1.0
233 / 24	TYR	Yes	—	—	—	—; occupancy ≥ 1.0
234 / 25	PRO	Yes	—	—	—	—; occupancy ≥ 1.0
235 / 26	TRP	Yes	—	—	—	—; occupancy ≥ 1.0
236 / 27	TRP	Yes	—	—	—	—; occupancy ≥ 1.0
237 / 28	PRO	Yes	—	—	—	—; occupancy ≥ 1.0
238 / 29	CYS	Yes	—	—	—	—; occupancy ≥ 1.0
239 / 30	MET	Yes	—	—	—	—; occupancy ≥ 1.0
240 / 31	VAL	Yes	—	—	—	—; occupancy ≥ 1.0
241 / 32	SER	Yes	—	—	—	—; occupancy ≥ 1.0
242 / 33	ALA	Yes	—	—	—	—; occupancy ≥ 1.0
243 / 34	ASP	Yes	—	—	—	—; occupancy ≥ 1.0
244 / 35	PRO	Yes	—	—	—	—; occupancy ≥ 1.0
245 / 36	LEU	Yes	—	—	—	—; occupancy ≥ 1.0
246 / 37	LEU	Yes	—	—	—	—; occupancy ≥ 1.0
247 / 38	HIS	Yes	—	—	—	—; occupancy ≥ 1.0
248 / 39	SER	Yes	—	—	—	—; occupancy ≥ 1.0
249 / 40	TYR	Yes	—	—	—	—; occupancy ≥ 1.0
250 / 41	THR	Yes	—	—	—	—; occupancy ≥ 1.0
251 / 42	LYS	Yes	—	—	—	—; occupancy ≥ 1.0
252 / 43	LEU	Yes	—	—	—	—; occupancy ≥ 1.0
253 / 44	LYS	Yes	—	NZ	NZ	—; occupancy ≥ 1.0
254 / 45	GLY	Yes	—	—	—	—; occupancy ≥ 1.0
255 / 46	GLN	Yes	—	—	—	—; occupancy ≥ 1.0
256 / 47	LYS	Yes	—	CE, NZ	CE, NZ	—; occupancy ≥ 1.0
257 / 48	LYS	Yes	—	CD, CE, NZ	CD, CE, NZ	—; occupancy ≥ 1.0
258 / 49	SER	Yes	—	—	—	—; occupancy ≥ 1.0
259 / 50	ALA	Yes	—	—	—	—; occupancy ≥ 1.0
260 / 51	ARG	Yes	—	—	—	—; occupancy ≥ 1.0
261 / 52	GLN	Yes	—	—	—	—; occupancy ≥ 1.0
262 / 53	TYR	Yes	—	—	—	—; occupancy ≥ 1.0
263 / 54	HIS	Yes	—	—	—	—; occupancy ≥ 1.0
264 / 55	VAL	Yes	—	—	—	—; occupancy ≥ 1.0
265 / 56	GLN	Yes	—	—	—	—; occupancy ≥ 1.0
266 / 57	PHE	Yes	—	—	—	—; occupancy ≥ 1.0
267 / 58	PHE	Yes	—	—	—	—; occupancy ≥ 1.0
268 / 59	GLY	Yes	—	—	—	—; occupancy ≥ 1.0
269 / 60	ASP	Yes	—	—	—	—; occupancy ≥ 1.0
270 / 61	ALA	Yes	—	—	—	—; occupancy ≥ 1.0
271 / 62	PRO	Yes	—	—	—	—; occupancy ≥ 1.0
272 / 63	GLU	Yes	—	—	—	A, B; occupancy ≥ 0.4
273 / 64	ARG	Yes	—	—	—	—; occupancy ≥ 1.0
274 / 65	ALA	Yes	—	—	—	—; occupancy ≥ 1.0
275 / 66	TRP	Yes	—	—	—	—; occupancy ≥ 1.0
276 / 67	ILE	Yes	—	—	—	—; occupancy ≥ 1.0
277 / 68	PHE	Yes	—	—	—	—; occupancy ≥ 1.0
278 / 69	GLU	Yes	—	—	—	—; occupancy ≥ 1.0
279 / 70	LYS	Yes	—	—	—	—; occupancy ≥ 1.0
280 / 71	SER	Yes	—	—	—	—; occupancy ≥ 1.0
281 / 72	LEU	Yes	—	—	—	—; occupancy ≥ 1.0
282 / 73	VAL	Yes	—	—	—	—; occupancy ≥ 1.0
283 / 74	ALA	Yes	—	—	—	—; occupancy ≥ 1.0
284 / 75	PHE	Yes	—	—	—	—; occupancy ≥ 1.0
285 / 76	GLU	Yes	—	—	—	—; occupancy ≥ 1.0
286 / 77	GLY	Yes	—	—	—	—; occupancy ≥ 1.0

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