STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Measured experimental coordinates · Phase 6C.1

6G3P · NSD3 PWWP1

Source chain D, canonical annotation-core residues 270–333. X-RAY DIFFRACTION · reported 2.8 Å. Original-coordinate SHA-256: ccd521e797a74fb99b19d2058837b9b848f522886e1772907e6b742dff24e0ad.

64Core residues with observed coordinates (64 annotated)
0Missing heavy side-chain atoms in observed core
1Experimental models evaluated
0Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

ModelCore residues observedMissing backboneMissing side-chain (union)Missing side-chain (consistent conformer)Partial occupancy residuesUnassessable chemistry
16400001

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity positionComponentObservedMissing backboneMissing side-chain (union)Missing side-chain (consistent)Alt & occupancy
270 / 25VALYes————; occupancy ≥ 1.0
271 / 26GLYYes————; occupancy ≥ 1.0
272 / 27ASPYes————; occupancy ≥ 1.0
273 / 28LEUYes————; occupancy ≥ 1.0
274 / 29VALYes————; occupancy ≥ 1.0
275 / 30TRPYes————; occupancy ≥ 1.0
276 / 31SERYes————; occupancy ≥ 1.0
277 / 32LYSYes————; occupancy ≥ 1.0
278 / 33VALYes————; occupancy ≥ 1.0
279 / 34GLYYes————; occupancy ≥ 1.0
280 / 35THRYes————; occupancy ≥ 1.0
281 / 36TYRYes————; occupancy ≥ 1.0
282 / 37PROYes————; occupancy ≥ 1.0
283 / 38TRPYes————; occupancy ≥ 1.0
284 / 39TRPYes————; occupancy ≥ 1.0
285 / 40PROYes————; occupancy ≥ 1.0
286 / 41CYSYes————; occupancy ≥ 1.0
287 / 42MSE chemistry unassessableYes————; occupancy ≥ 1.0
288 / 43VALYes————; occupancy ≥ 1.0
289 / 44SERYes————; occupancy ≥ 1.0
290 / 45SERYes————; occupancy ≥ 1.0
291 / 46ASPYes————; occupancy ≥ 1.0
292 / 47PROYes————; occupancy ≥ 1.0
293 / 48GLNYes————; occupancy ≥ 1.0
294 / 49LEUYes————; occupancy ≥ 1.0
295 / 50GLUYes————; occupancy ≥ 1.0
296 / 51VALYes————; occupancy ≥ 1.0
297 / 52HISYes————; occupancy ≥ 1.0
298 / 53THRYes————; occupancy ≥ 1.0
299 / 54LYSYes————; occupancy ≥ 1.0
300 / 55ILEYes————; occupancy ≥ 1.0
301 / 56ASNYes————; occupancy ≥ 1.0
302 / 57THRYes————; occupancy ≥ 1.0
303 / 58ARGYes————; occupancy ≥ 1.0
304 / 59GLYYes————; occupancy ≥ 1.0
305 / 60ALAYes————; occupancy ≥ 1.0
306 / 61ARGYes————; occupancy ≥ 1.0
307 / 62GLUYes————; occupancy ≥ 1.0
308 / 63TYRYes————; occupancy ≥ 1.0
309 / 64HISYes————; occupancy ≥ 1.0
310 / 65VALYes————; occupancy ≥ 1.0
311 / 66GLNYes————; occupancy ≥ 1.0
312 / 67PHEYes————; occupancy ≥ 1.0
313 / 68PHEYes————; occupancy ≥ 1.0
314 / 69SERYes————; occupancy ≥ 1.0
315 / 70ASNYes————; occupancy ≥ 1.0
316 / 71GLNYes————; occupancy ≥ 1.0
317 / 72PROYes————; occupancy ≥ 1.0
318 / 73GLUYes————; occupancy ≥ 1.0
319 / 74ARGYes————; occupancy ≥ 1.0
320 / 75ALAYes————; occupancy ≥ 1.0
321 / 76TRPYes————; occupancy ≥ 1.0
322 / 77VALYes————; occupancy ≥ 1.0
323 / 78HISYes————; occupancy ≥ 1.0
324 / 79GLUYes————; occupancy ≥ 1.0
325 / 80LYSYes————; occupancy ≥ 1.0
326 / 81ARGYes————; occupancy ≥ 1.0
327 / 82VALYes————; occupancy ≥ 1.0
328 / 83ARGYes————; occupancy ≥ 1.0
329 / 84GLUYes————; occupancy ≥ 1.0
330 / 85TYRYes————; occupancy ≥ 1.0
331 / 86LYSYes————; occupancy ≥ 1.0
332 / 87GLYYes————; occupancy ≥ 1.0
333 / 88HISYes————; occupancy ≥ 1.0

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