Measured experimental coordinates · Phase 6C.1
5Y1Z · ZMYND8 PWWP1
Source chain D, canonical annotation-core residues 277–327. X-RAY DIFFRACTION · reported 2.676 Å. Original-coordinate SHA-256: be13d6b91869c9f53cf8d4f56feeafd44b575e91a966831894aab4ceffbf73a3.
Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry
Model-aware structural assessment
Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.
| Model | Core residues observed | Missing backbone | Missing side-chain (union) | Missing side-chain (consistent conformer) | Partial occupancy residues | Unassessable chemistry |
|---|---|---|---|---|---|---|
| 1 | 51 | 0 | 6 | 6 | 0 | 0 |
Experimental ligand environments
Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.
No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.
Residue-level coordinate and atom completeness
"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.
| Canonical / entity position | Component | Observed | Missing backbone | Missing side-chain (union) | Missing side-chain (consistent) | Alt & occupancy |
|---|---|---|---|---|---|---|
| 277 / 195 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 278 / 196 | HIS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 279 / 197 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 280 / 198 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 281 / 199 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 282 / 200 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 283 / 201 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 284 / 202 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 285 / 203 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 286 / 204 | LYS | Yes | — | CD, CE, CG, NZ | CD, CE, CG, NZ | —; occupancy ≥ 1.0 |
| 287 / 205 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 288 / 206 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 289 / 207 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 290 / 208 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 291 / 209 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 292 / 210 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 293 / 211 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 294 / 212 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 295 / 213 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 296 / 214 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 297 / 215 | ARG | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 298 / 216 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 299 / 217 | LYS | Yes | — | CE, NZ | CE, NZ | —; occupancy ≥ 1.0 |
| 300 / 218 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 301 / 219 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 302 / 220 | GLN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 303 / 221 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 304 / 222 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 305 / 223 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 306 / 224 | ARG | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 307 / 225 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 308 / 226 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 309 / 227 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 310 / 228 | GLN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 311 / 229 | HIS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 312 / 230 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 313 / 231 | ARG | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 314 / 232 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 315 / 233 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 316 / 234 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 317 / 235 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 318 / 236 | ILE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 319 / 237 | ASN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 320 / 238 | ASN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 321 / 239 | CYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 322 / 240 | TYR | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 323 / 241 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 324 / 242 | MET | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 325 / 243 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 326 / 244 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 327 / 245 | GLU | Yes | — | — | — | —; occupancy ≥ 1.0 |
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