Measured experimental coordinates · Phase 6C.1
5VC8 · NSD2 PWWP1
Source chain A, canonical annotation-core residues 222–286. X-RAY DIFFRACTION · reported 1.8 Å. Original-coordinate SHA-256: 5a69ef522042f0c3634099c1954524bc950bb23fc6a49c830dc77181b336efbf.
Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry
Model-aware structural assessment
Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.
| Model | Core residues observed | Missing backbone | Missing side-chain (union) | Missing side-chain (consistent conformer) | Partial occupancy residues | Unassessable chemistry |
|---|---|---|---|---|---|---|
| 1 | 60 | 0 | 10 | 10 | 0 | 1 |
Experimental ligand environments
Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.
No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.
Residue-level coordinate and atom completeness
"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.
| Canonical / entity position | Component | Observed | Missing backbone | Missing side-chain (union) | Missing side-chain (consistent) | Alt & occupancy |
|---|---|---|---|---|---|---|
| 222 / 13 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 223 / 14 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 224 / 15 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 225 / 16 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 226 / 17 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 227 / 18 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 228 / 19 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 229 / 20 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 230 / 21 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 231 / 22 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 232 / 23 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 233 / 24 | TYR | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 234 / 25 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 235 / 26 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 236 / 27 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 237 / 28 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 238 / 29 | CYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 239 / 30 | MSE chemistry unassessable | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 240 / 31 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 241 / 32 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 242 / 33 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 243 / 34 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 244 / 35 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 245 / 36 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 246 / 37 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 247 / 38 | HIS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 248 / 39 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 249 / 40 | TYR | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 250 / 41 | THR | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 251 / 42 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 252 / 43 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 253 / 44 | LYS | Yes | — | NZ | NZ | —; occupancy ≥ 1.0 |
| 254 / 45 | GLY | No coordinates | — | — | — | — |
| 255 / 46 | GLN | No coordinates | — | — | — | — |
| 256 / 47 | LYS | No coordinates | — | — | — | — |
| 257 / 48 | LYS | No coordinates | — | — | — | — |
| 258 / 49 | SER | No coordinates | — | — | — | — |
| 259 / 50 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 260 / 51 | ARG | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 261 / 52 | GLN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 262 / 53 | TYR | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 263 / 54 | HIS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 264 / 55 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 265 / 56 | GLN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 266 / 57 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 267 / 58 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 268 / 59 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 269 / 60 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 270 / 61 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 271 / 62 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 272 / 63 | GLU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 273 / 64 | ARG | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 274 / 65 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 275 / 66 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 276 / 67 | ILE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 277 / 68 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 278 / 69 | GLU | Yes | — | OE1, OE2 | OE1, OE2 | —; occupancy ≥ 1.0 |
| 279 / 70 | LYS | Yes | — | CD, CE, CG, NZ | CD, CE, CG, NZ | —; occupancy ≥ 1.0 |
| 280 / 71 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 281 / 72 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 282 / 73 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 283 / 74 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 284 / 75 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 285 / 76 | GLU | Yes | — | CD, OE1, OE2 | CD, OE1, OE2 | —; occupancy ≥ 1.0 |
| 286 / 77 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
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