STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Measured experimental coordinates · Phase 6C.1

5B73 · ZMYND8 PWWP1

Source chain A, canonical annotation-core residues 277–327. X-RAY DIFFRACTION · reported 1.8 Å. Original-coordinate SHA-256: a14aa28e93213a99e4976780d97eb959783d0aaa833cdf19ab277b65a5b19153.

51Core residues with observed coordinates (51 annotated)
0Missing heavy side-chain atoms in observed core
1Experimental models evaluated
0Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

ModelCore residues observedMissing backboneMissing side-chain (union)Missing side-chain (consistent conformer)Partial occupancy residuesUnassessable chemistry
15100000

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity positionComponentObservedMissing backboneMissing side-chain (union)Missing side-chain (consistent)Alt & occupancy
277 / 210PROYes————; occupancy ≥ 1.0
278 / 211HISYes————; occupancy ≥ 1.0
279 / 212PROYes————; occupancy ≥ 1.0
280 / 213LEUYes————; occupancy ≥ 1.0
281 / 214VALYes————; occupancy ≥ 1.0
282 / 215TRPYes————; occupancy ≥ 1.0
283 / 216ALAYes————; occupancy ≥ 1.0
284 / 217LYSYes————; occupancy ≥ 1.0
285 / 218LEUYes————; occupancy ≥ 1.0
286 / 219LYSYes————; occupancy ≥ 1.0
287 / 220GLYYes————; occupancy ≥ 1.0
288 / 221PHEYes————; occupancy ≥ 1.0
289 / 222PROYes————; occupancy ≥ 1.0
290 / 223PHEYes————; occupancy ≥ 1.0
291 / 224TRPYes————; occupancy ≥ 1.0
292 / 225PROYes————; occupancy ≥ 1.0
293 / 226ALAYes————; occupancy ≥ 1.0
294 / 227LYSYes————; occupancy ≥ 1.0
295 / 228ALAYes————; occupancy ≥ 1.0
296 / 229LEUYes————; occupancy ≥ 1.0
297 / 230ARGYes————; occupancy ≥ 1.0
298 / 231ASPYes————; occupancy ≥ 1.0
299 / 232LYSYes————; occupancy ≥ 1.0
300 / 233ASPYes————; occupancy ≥ 1.0
301 / 234GLYYes————; occupancy ≥ 1.0
302 / 235GLNYes————; occupancy ≥ 1.0
303 / 236VALYes————; occupancy ≥ 1.0
304 / 237ASPYes————; occupancy ≥ 1.0
305 / 238ALAYes————; occupancy ≥ 1.0
306 / 239ARGYes————; occupancy ≥ 1.0
307 / 240PHEYes————; occupancy ≥ 1.0
308 / 241PHEYes————; occupancy ≥ 1.0
309 / 242GLYYes————; occupancy ≥ 1.0
310 / 243GLNYes————; occupancy ≥ 1.0
311 / 244HISYes————; occupancy ≥ 1.0
312 / 245ASPYes————; occupancy ≥ 1.0
313 / 246ARGYes————; occupancy ≥ 1.0
314 / 247ALAYes————; occupancy ≥ 1.0
315 / 248TRPYes————; occupancy ≥ 1.0
316 / 249VALYes————; occupancy ≥ 1.0
317 / 250PROYes————; occupancy ≥ 1.0
318 / 251ILEYes————; occupancy ≥ 1.0
319 / 252ASNYes————; occupancy ≥ 1.0
320 / 253ASNYes————; occupancy ≥ 1.0
321 / 254CYSYes————; occupancy ≥ 1.0
322 / 255TYRYes————; occupancy ≥ 1.0
323 / 256LEUYes————; occupancy ≥ 1.0
324 / 257METYes————; occupancy ≥ 1.0
325 / 258SERYes————; occupancy ≥ 1.0
326 / 259LYSYes————; occupancy ≥ 1.0
327 / 260GLUYes————; occupancy ≥ 1.0

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