STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Measured experimental coordinates · Phase 6C.1

4NS5 · ZMYND11 PWWP1

Source chain A, canonical annotation-core residues 280–331. X-RAY DIFFRACTION · reported 1.9 Å. Original-coordinate SHA-256: d6f35d5c06ce150fc8a1c9203a1545c94d50bd5caef6a08db95ea73a7fa89876.

52Core residues with observed coordinates (52 annotated)
0Missing heavy side-chain atoms in observed core
1Experimental models evaluated
0Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

ModelCore residues observedMissing backboneMissing side-chain (union)Missing side-chain (consistent conformer)Partial occupancy residuesUnassessable chemistry
15200010

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity positionComponentObservedMissing backboneMissing side-chain (union)Missing side-chain (consistent)Alt & occupancy
280 / 128ASNYes————; occupancy ≥ 1.0
281 / 129HISYes————; occupancy ≥ 1.0
282 / 130GLUYes————; occupancy ≥ 1.0
283 / 131LEUYes————; occupancy ≥ 1.0
284 / 132VALYes————; occupancy ≥ 1.0
285 / 133TRPYes————; occupancy ≥ 1.0
286 / 134ALAYes————; occupancy ≥ 1.0
287 / 135LYSYes————; occupancy ≥ 1.0
288 / 136METYes————; occupancy ≥ 1.0
289 / 137LYSYes————; occupancy ≥ 1.0
290 / 138GLYYes————; occupancy ≥ 1.0
291 / 139PHEYes————; occupancy ≥ 1.0
292 / 140GLYYes————; occupancy ≥ 1.0
293 / 141PHEYes————; occupancy ≥ 1.0
294 / 142TRPYes————; occupancy ≥ 1.0
295 / 143PROYes————; occupancy ≥ 1.0
296 / 144ALAYes————; occupancy ≥ 1.0
297 / 145LYSYes————; occupancy ≥ 1.0
298 / 146VALYes————; occupancy ≥ 1.0
299 / 147METYes————; occupancy ≥ 1.0
300 / 148GLNYes————; occupancy ≥ 1.0
301 / 149LYSYes————; occupancy ≥ 1.0
302 / 150GLUYes————; occupancy ≥ 1.0
303 / 151ASPYes————; occupancy ≥ 1.0
304 / 152ASNYes————; occupancy ≥ 1.0
305 / 153GLNYes————; occupancy ≥ 1.0
306 / 154VALYes————; occupancy ≥ 1.0
307 / 155ASPYes————; occupancy ≥ 1.0
308 / 156VALYes————; occupancy ≥ 1.0
309 / 157ARGYes————; occupancy ≥ 1.0
310 / 158PHEYes————; occupancy ≥ 1.0
311 / 159PHEYes————; occupancy ≥ 1.0
312 / 160GLYYes————; occupancy ≥ 1.0
313 / 161HISYes————; occupancy ≥ 1.0
314 / 162HISYes————; occupancy ≥ 1.0
315 / 163HISYes————; occupancy ≥ 1.0
316 / 164GLNYes————; occupancy ≥ 0.2
317 / 165ARGYes————; occupancy ≥ 1.0
318 / 166ALAYes————; occupancy ≥ 1.0
319 / 167TRPYes————; occupancy ≥ 1.0
320 / 168ILEYes————; occupancy ≥ 1.0
321 / 169PROYes————; occupancy ≥ 1.0
322 / 170SERYes————; occupancy ≥ 1.0
323 / 171GLUYes————; occupancy ≥ 1.0
324 / 172ASNYes————; occupancy ≥ 1.0
325 / 173ILEYes————; occupancy ≥ 1.0
326 / 174GLNYes————; occupancy ≥ 1.0
327 / 175ASPYes————; occupancy ≥ 1.0
328 / 176ILEYes————; occupancy ≥ 1.0
329 / 177THRYes————; occupancy ≥ 1.0
330 / 178VALYes————; occupancy ≥ 1.0
331 / 179ASNYes————; occupancy ≥ 1.0

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