Measured experimental coordinates · Phase 6C.1
3QKJ · DNMT3B PWWP1
Source chain C, canonical annotation-core residues 225–283. X-RAY DIFFRACTION · reported 2.04 Å. Original-coordinate SHA-256: e94a2082f64ba107b7c13187a1af6dc528db6e5340be742ad57500d752199174.
Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry
Model-aware structural assessment
Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.
| Model | Core residues observed | Missing backbone | Missing side-chain (union) | Missing side-chain (consistent conformer) | Partial occupancy residues | Unassessable chemistry |
|---|---|---|---|---|---|---|
| 1 | 59 | 0 | 10 | 10 | 0 | 0 |
Experimental ligand environments
Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.
No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.
Residue-level coordinate and atom completeness
"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.
| Canonical / entity position | Component | Observed | Missing backbone | Missing side-chain (union) | Missing side-chain (consistent) | Alt & occupancy |
|---|---|---|---|---|---|---|
| 225 / 21 | ILE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 226 / 22 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 227 / 23 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 228 / 24 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 229 / 25 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 230 / 26 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 231 / 27 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 232 / 28 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 233 / 29 | ILE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 234 / 30 | LYS | Yes | — | CD, CE, CG, NZ | CD, CE, CG, NZ | —; occupancy ≥ 1.0 |
| 235 / 31 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 236 / 32 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 237 / 33 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 238 / 34 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 239 / 35 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 240 / 36 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 241 / 37 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 242 / 38 | MET | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 243 / 39 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 244 / 40 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 245 / 41 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 246 / 42 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 247 / 43 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 248 / 44 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 249 / 45 | THR | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 250 / 46 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 251 / 47 | LYS | Yes | — | CE, NZ | CE, NZ | —; occupancy ≥ 1.0 |
| 252 / 48 | ARG | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 253 / 49 | GLN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 254 / 50 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 255 / 51 | MET | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 256 / 52 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 257 / 53 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 258 / 54 | MET | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 259 / 55 | ARG | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 260 / 56 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 261 / 57 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 262 / 58 | GLN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 263 / 59 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 264 / 60 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 265 / 61 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 266 / 62 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 267 / 63 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 268 / 64 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 269 / 65 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 270 / 66 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 271 / 67 | GLU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 272 / 68 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 273 / 69 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 274 / 70 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 275 / 71 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 276 / 72 | LYS | Yes | — | CD, CE, CG, NZ | CD, CE, CG, NZ | —; occupancy ≥ 1.0 |
| 277 / 73 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 278 / 74 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 279 / 75 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 280 / 76 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 281 / 77 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 282 / 78 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 283 / 79 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
Export every residue · Export atom contacts · Export ensemble records · Scientific provenance.