Measured experimental coordinates · Phase 6C.1
1KHC · Dnmt3b PWWP1
Source chain A, canonical annotation-core residues 232–290. X-RAY DIFFRACTION · reported 1.8 Å. Original-coordinate SHA-256: 74e6ef75c14272818121a250f29daee64bb2485d0fdf784911795a3d408e79d7.
Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry
Model-aware structural assessment
Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.
| Model | Core residues observed | Missing backbone | Missing side-chain (union) | Missing side-chain (consistent conformer) | Partial occupancy residues | Unassessable chemistry |
|---|---|---|---|---|---|---|
| 1 | 59 | 0 | 9 | 9 | 1 | 0 |
Experimental ligand environments
Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.
No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.
Residue-level coordinate and atom completeness
"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.
| Canonical / entity position | Component | Observed | Missing backbone | Missing side-chain (union) | Missing side-chain (consistent) | Alt & occupancy |
|---|---|---|---|---|---|---|
| 232 / 14 | ILE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 233 / 15 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 234 / 16 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 235 / 17 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 236 / 18 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 237 / 19 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 238 / 20 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 239 / 21 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 240 / 22 | ILE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 241 / 23 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 242 / 24 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 243 / 25 | PHE | Yes | — | CB, CD1, CD2, CE1, CE2, CG, CZ | CB, CD1, CD2, CE1, CE2, CG, CZ | —; occupancy ≥ 1.0 |
| 244 / 26 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 245 / 27 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 246 / 28 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 247 / 29 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 248 / 30 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 249 / 31 | MET | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 250 / 32 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 251 / 33 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 252 / 34 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 253 / 35 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 254 / 36 | LYS | Yes | — | CE, NZ | CE, NZ | —; occupancy ≥ 1.0 |
| 255 / 37 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 256 / 38 | THR | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 257 / 39 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 258 / 40 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 259 / 41 | ARG | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 260 / 42 | GLN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 261 / 43 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 262 / 44 | MET | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 263 / 45 | PRO | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 264 / 46 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 265 / 47 | MET | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 266 / 48 | ARG | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 267 / 49 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 268 / 50 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 269 / 51 | GLN | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 270 / 52 | TRP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 271 / 53 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 272 / 54 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 273 / 55 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 274 / 56 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 275 / 57 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 276 / 58 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 277 / 59 | SER | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 278 / 60 | GLU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 279 / 61 | ILE | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 280 / 62 | SER | Yes | — | — | — | A, B; occupancy ≥ 0.5 |
| 281 / 63 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 282 / 64 | ASP | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 283 / 65 | LYS | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 284 / 66 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 285 / 67 | VAL | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 286 / 68 | ALA | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 287 / 69 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 288 / 70 | GLY | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 289 / 71 | LEU | Yes | — | — | — | —; occupancy ≥ 1.0 |
| 290 / 72 | PHE | Yes | — | — | — | —; occupancy ≥ 1.0 |
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