STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Measured experimental coordinates · Phase 6C.1

1H3Z · pdp2 PWWP1

Source chain A, canonical annotation-core residues 125–189. SOLUTION NMR. Original-coordinate SHA-256: abbf7db534f5b636fde8d6f307a2834455e8c50f3f5691dc1cb22f87387e144f.

65Core residues with observed coordinates (65 annotated)
0Missing heavy side-chain atoms in observed core
23Experimental models evaluated
0Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

ModelCore residues observedMissing backboneMissing side-chain (union)Missing side-chain (consistent conformer)Partial occupancy residuesUnassessable chemistry
16500000
26500000
36500000
46500000
56500000
66500000
76500000
86500000
96500000
106500000
116500000
126500000
136500000
146500000
156500000
166500000
176500000
186500000
196500000
206500000
216500000
226500000
236500000

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity positionComponentObservedMissing backboneMissing side-chain (union)Missing side-chain (consistent)Alt & occupancy
125 / 9PROYes————; occupancy ≥ 1.0
126 / 10GLYYes————; occupancy ≥ 1.0
127 / 11METYes————; occupancy ≥ 1.0
128 / 12ARGYes————; occupancy ≥ 1.0
129 / 13VALYes————; occupancy ≥ 1.0
130 / 14LEUYes————; occupancy ≥ 1.0
131 / 15THRYes————; occupancy ≥ 1.0
132 / 16LYSYes————; occupancy ≥ 1.0
133 / 17METYes————; occupancy ≥ 1.0
134 / 18SERYes————; occupancy ≥ 1.0
135 / 19GLYYes————; occupancy ≥ 1.0
136 / 20PHEYes————; occupancy ≥ 1.0
137 / 21PROYes————; occupancy ≥ 1.0
138 / 22TRPYes————; occupancy ≥ 1.0
139 / 23TRPYes————; occupancy ≥ 1.0
140 / 24PROYes————; occupancy ≥ 1.0
141 / 25SERYes————; occupancy ≥ 1.0
142 / 26METYes————; occupancy ≥ 1.0
143 / 27VALYes————; occupancy ≥ 1.0
144 / 28VALYes————; occupancy ≥ 1.0
145 / 29THRYes————; occupancy ≥ 1.0
146 / 30GLUYes————; occupancy ≥ 1.0
147 / 31SERYes————; occupancy ≥ 1.0
148 / 32LYSYes————; occupancy ≥ 1.0
149 / 33METYes————; occupancy ≥ 1.0
150 / 34THRYes————; occupancy ≥ 1.0
151 / 35SERYes————; occupancy ≥ 1.0
152 / 36VALYes————; occupancy ≥ 1.0
153 / 37ALAYes————; occupancy ≥ 1.0
154 / 38ARGYes————; occupancy ≥ 1.0
155 / 39LYSYes————; occupancy ≥ 1.0
156 / 40SERYes————; occupancy ≥ 1.0
157 / 41LYSYes————; occupancy ≥ 1.0
158 / 42PROYes————; occupancy ≥ 1.0
159 / 43LYSYes————; occupancy ≥ 1.0
160 / 44ARGYes————; occupancy ≥ 1.0
161 / 45ALAYes————; occupancy ≥ 1.0
162 / 46GLYYes————; occupancy ≥ 1.0
163 / 47THRYes————; occupancy ≥ 1.0
164 / 48PHEYes————; occupancy ≥ 1.0
165 / 49TYRYes————; occupancy ≥ 1.0
166 / 50PROYes————; occupancy ≥ 1.0
167 / 51VALYes————; occupancy ≥ 1.0
168 / 52ILEYes————; occupancy ≥ 1.0
169 / 53PHEYes————; occupancy ≥ 1.0
170 / 54PHEYes————; occupancy ≥ 1.0
171 / 55PROYes————; occupancy ≥ 1.0
172 / 56ASNYes————; occupancy ≥ 1.0
173 / 57LYSYes————; occupancy ≥ 1.0
174 / 58GLUYes————; occupancy ≥ 1.0
175 / 59TYRYes————; occupancy ≥ 1.0
176 / 60LEUYes————; occupancy ≥ 1.0
177 / 61TRPYes————; occupancy ≥ 1.0
178 / 62THRYes————; occupancy ≥ 1.0
179 / 63GLYYes————; occupancy ≥ 1.0
180 / 64SERYes————; occupancy ≥ 1.0
181 / 65ASPYes————; occupancy ≥ 1.0
182 / 66SERYes————; occupancy ≥ 1.0
183 / 67LEUYes————; occupancy ≥ 1.0
184 / 68THRYes————; occupancy ≥ 1.0
185 / 69PROYes————; occupancy ≥ 1.0
186 / 70LEUYes————; occupancy ≥ 1.0
187 / 71THRYes————; occupancy ≥ 1.0
188 / 72SERYes————; occupancy ≥ 1.0
189 / 73GLUYes————; occupancy ≥ 1.0

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