PWWPAtlas
STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Measured experimental coordinates · Phase 6C.1

11OI · DNMT3A PWWP1

Source chain F, canonical annotation-core residues 292–350. ELECTRON MICROSCOPY · reported 3.66 Å. Original-coordinate SHA-256: 6f0a4edba894798ac4af65eaf6759078bf5528df03b455fc7b8ca78239e6b1c0.

59Core residues with observed coordinates (59 annotated)
198Missing heavy side-chain atoms in observed core
1Experimental models evaluated
0Source-supported ligand environments

Open deposited-coordinate molecular viewer Protein/domain context Original PDB entry

Model-aware structural assessment

Counts concern the annotated PWWP core. Different NMR models are evaluated independently, without averaging their coordinates into an artificial model.

ModelCore residues observedMissing backboneMissing side-chain (union)Missing side-chain (consistent conformer)Partial occupancy residuesUnassessable chemistry
159019819800

Experimental ligand environments

Only separately source-classified research ligands are listed. Native annotation-core contacts and broader Pfam-fold contacts are identified separately. A simple distance is not an experimental affinity or density-quality score.

No verified research-ligand local environment is assigned to this chain/domain. It may be apo, structurally incomplete, or lack the necessary source-role verification.

Residue-level coordinate and atom completeness

"Missing" applies only to residues with observed atoms and supported chemical templates. Unobserved residues are reported separately. Alternate-conformer union presence is distinct from a single internally consistent conformer.

Canonical / entity positionComponentObservedMissing backboneMissing side-chain (union)Missing side-chain (consistent)Alt & occupancy
292 / 13ILEYes—CD1, CG1, CG2CD1, CG1, CG2—; occupancy ≥ 1.0
293 / 14GLYYes————; occupancy ≥ 1.0
294 / 15GLUYes—CD, CG, OE1, OE2CD, CG, OE1, OE2—; occupancy ≥ 1.0
295 / 16LEUYes—CD1, CD2, CGCD1, CD2, CG—; occupancy ≥ 1.0
296 / 17VALYes—CG1, CG2CG1, CG2—; occupancy ≥ 1.0
297 / 18TRPYes—CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1—; occupancy ≥ 1.0
298 / 19GLYYes————; occupancy ≥ 1.0
299 / 20LYSYes—CD, CE, CG, NZCD, CE, CG, NZ—; occupancy ≥ 1.0
300 / 21LEUYes—CD1, CD2, CGCD1, CD2, CG—; occupancy ≥ 1.0
301 / 22ARGYes—CD, CG, CZ, NE, NH1, NH2CD, CG, CZ, NE, NH1, NH2—; occupancy ≥ 1.0
302 / 23GLYYes————; occupancy ≥ 1.0
303 / 24PHEYes—CD1, CD2, CE1, CE2, CG, CZCD1, CD2, CE1, CE2, CG, CZ—; occupancy ≥ 1.0
304 / 25SERYes—OGOG—; occupancy ≥ 1.0
305 / 26TRPYes—CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1—; occupancy ≥ 1.0
306 / 27TRPYes—CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1—; occupancy ≥ 1.0
307 / 28PROYes—CD, CGCD, CG—; occupancy ≥ 1.0
308 / 29GLYYes————; occupancy ≥ 1.0
309 / 30ARGYes—CD, CG, CZ, NE, NH1, NH2CD, CG, CZ, NE, NH1, NH2—; occupancy ≥ 1.0
310 / 31ILEYes—CD1, CG1, CG2CD1, CG1, CG2—; occupancy ≥ 1.0
311 / 32VALYes—CG1, CG2CG1, CG2—; occupancy ≥ 1.0
312 / 33SERYes—OGOG—; occupancy ≥ 1.0
313 / 34TRPYes—CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1—; occupancy ≥ 1.0
314 / 35TRPYes—CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1—; occupancy ≥ 1.0
315 / 36METYes—CE, CG, SDCE, CG, SD—; occupancy ≥ 1.0
316 / 37THRYes—CG2, OG1CG2, OG1—; occupancy ≥ 1.0
317 / 38GLYYes————; occupancy ≥ 1.0
318 / 39ARGYes—CD, CG, CZ, NE, NH1, NH2CD, CG, CZ, NE, NH1, NH2—; occupancy ≥ 1.0
319 / 40SERYes—OGOG—; occupancy ≥ 1.0
320 / 41ARGYes—CD, CG, CZ, NE, NH1, NH2CD, CG, CZ, NE, NH1, NH2—; occupancy ≥ 1.0
321 / 42ALAYes————; occupancy ≥ 1.0
322 / 43ALAYes————; occupancy ≥ 1.0
323 / 44GLUYes—CD, CG, OE1, OE2CD, CG, OE1, OE2—; occupancy ≥ 1.0
324 / 45GLYYes————; occupancy ≥ 1.0
325 / 46THRYes—CG2, OG1CG2, OG1—; occupancy ≥ 1.0
326 / 47ARGYes—CD, CG, CZ, NE, NH1, NH2CD, CG, CZ, NE, NH1, NH2—; occupancy ≥ 1.0
327 / 48TRPYes—CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1—; occupancy ≥ 1.0
328 / 49VALYes—CG1, CG2CG1, CG2—; occupancy ≥ 1.0
329 / 50METYes—CE, CG, SDCE, CG, SD—; occupancy ≥ 1.0
330 / 51TRPYes—CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1CD1, CD2, CE2, CE3, CG, CH2, CZ2, CZ3, NE1—; occupancy ≥ 1.0
331 / 52PHEYes—CD1, CD2, CE1, CE2, CG, CZCD1, CD2, CE1, CE2, CG, CZ—; occupancy ≥ 1.0
332 / 53GLYYes————; occupancy ≥ 1.0
333 / 54ASPYes—CG, OD1, OD2CG, OD1, OD2—; occupancy ≥ 1.0
334 / 55GLYYes————; occupancy ≥ 1.0
335 / 56LYSYes—CD, CE, CG, NZCD, CE, CG, NZ—; occupancy ≥ 1.0
336 / 57PHEYes—CD1, CD2, CE1, CE2, CG, CZCD1, CD2, CE1, CE2, CG, CZ—; occupancy ≥ 1.0
337 / 58SERYes—OGOG—; occupancy ≥ 1.0
338 / 59VALYes—CG1, CG2CG1, CG2—; occupancy ≥ 1.0
339 / 60VALYes—CG1, CG2CG1, CG2—; occupancy ≥ 1.0
340 / 61CYSYes—SGSG—; occupancy ≥ 1.0
341 / 62VALYes—CG1, CG2CG1, CG2—; occupancy ≥ 1.0
342 / 63GLUYes—CD, CG, OE1, OE2CD, CG, OE1, OE2—; occupancy ≥ 1.0
343 / 64LYSYes—CD, CE, CG, NZCD, CE, CG, NZ—; occupancy ≥ 1.0
344 / 65LEUYes—CD1, CD2, CGCD1, CD2, CG—; occupancy ≥ 1.0
345 / 66METYes—CE, CG, SDCE, CG, SD—; occupancy ≥ 1.0
346 / 67PROYes—CD, CGCD, CG—; occupancy ≥ 1.0
347 / 68LEUYes—CD1, CD2, CGCD1, CD2, CG—; occupancy ≥ 1.0
348 / 69SERYes—OGOG—; occupancy ≥ 1.0
349 / 70SERYes—OGOG—; occupancy ≥ 1.0
350 / 71PHEYes—CD1, CD2, CE1, CE2, CG, CZCD1, CD2, CE1, CE2, CG, CZ—; occupancy ≥ 1.0

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