Resolved chemical identity

(Z)-N-methyl-3-sulfanyl-prop-2-enamide

Deposited research ligand · no curated assay

complete_deposited_InChIKey

0 assay / association records0 preparations1 research-ligand PDB entries

Clinical / development status: Not independently curated. A chemical probe classification does not imply medicinal approval.

Identity is separate from preparation

Chemical identity

Stable identity: INCHIKEY:BYVOHKLWUDZCNW-NSCUHMNNSA-N
Full InChIKey: BYVOHKLWUDZCNW-NSCUHMNNSA-N
Source identity status: complete deposited InChIKey
Deposited CCD identifiers: A1EF6
External identifiers: See deposited identity and source links

Reference formula: C4H7NOS
Calculated molecular weight: 117.173
Calculated descriptors: cLogP 0.1759 · TPSA 29.1 Å² · HBD 2 · HBA 2RDKit 2025.09.3; calculations for this source identity, not experimental measurements.
Depiction validation: verified smiles full inchikey match

SMILES, InChI & complete identity record

Isomeric SMILES: CNC(=O)/C=C/S
InChI: Not curated

{
  "aliases": [
    "(Z)-N-methyl-3-sulfanyl-prop-2-enamide"
  ],
  "ccd_ids": [
    "A1EF6"
  ],
  "ccd_names": "[\"(Z)-N-methyl-3-sulfanyl-prop-2-enamide\"]",
  "ccd_types": "[\"non-polymer\"]",
  "chemical_id": "INCHIKEY:BYVOHKLWUDZCNW-NSCUHMNNSA-N",
  "connectivity_block": "BYVOHKLWUDZCNW",
  "curated_source_sha256": null,
  "curation_version": "frozen-v1.2",
  "external_identifiers": {},
  "formal_charge_by_ccd": "{\"A1EF6\": 0}",
  "formulae": "[\"C4 H7 N O S\"]",
  "geometry_note": "CCD ideal SDF is a reference chemical geometry, not a deposited bound pose.",
  "identity_status": "complete_deposited_InChIKey",
  "inchikey": "BYVOHKLWUDZCNW-NSCUHMNNSA-N",
  "inventory_origin": "v1_CCD_inventory",
  "isomeric_smiles": "CNC(=O)/C=C/S",
  "primary_name": "(Z)-N-methyl-3-sulfanyl-prop-2-enamide",
  "retrieval_date": "2026-10-24",
  "smiles_stereo_by_ccd": "{\"A1EF6\": \"CNC(=O)/C=C/S\"}",
  "source_metadata_sha256": "{\"A1EF6\": \"250155c79b7258a798fb30a648b6c3f720c1cec4dff22fd757c75720c7681dde\"}",
  "source_urls": [
    "https://www.rcsb.org/ligand/A1EF6"
  ]
}

Measured target and original context

Bioactivity & experimental observations

Download assay CSV

Each row is one source-specific observation. Repeated measurements of this compound are not independent compounds. Direct binding, functional displacement and cellular outcomes retain their distinct endpoints.

Preparation	Tested target & construct	Method / endpoint	Original observation	Conditions & uncertainty	Source & verification
No observations match these filters. Missing curation is not evidence of biological inactivity.

Exact deposited instances

Experimental structures

Native-core and broader Pfam proximity are distinguished from contacts elsewhere in a protein. Each action opens the actual deposited ligand instance. Geometric proximity does not supply a measured binding affinity.

Entry / ligand	Native domain & protein chain	Geometric evidence	Minimum distance	Inspect
9KN9 · A1EF6PDB:9KN9:LIG:D:A1EF6:402:.	NSD2 PWWP1Protein label chain A · ligand label chain D	native annotation core contactexperimentally studied covalent ligandreported covalent structural ligand · research ligand. Deposited geometry is not solution affinity.	Core: 3.4126 Å Pfam: 2.0153 Å	View deposited instance
9KN9 · A1EF6PDB:9KN9:LIG:G:A1EF6:402:.	NSD2 PWWP1Protein label chain B · ligand label chain G	native annotation core contactexperimentally studied covalent ligandreported covalent structural ligand · research ligand. Deposited geometry is not solution affinity.	Core: 3.3166 Å Pfam: 2.0184 Å	View deposited instance

Preparations, identities and controls remain separate

Experimental context

No measured preparation is linked to this deposited identity in the curated snapshot.

Provenance and reproducibility

Sources & downloads

https://www.rcsb.org/ligand/A1EF6

Download complete evidence JSON Curation methods & source receipts

Snapshot 2026-10-26 · phase5-1.0.0 · original measurements, operators, constructs and uncertainty are retained in the exports.