STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Exact experimental source · Phase 6D

7HGF · T0Y

UP:Q7Z4V5:PWWP1 · protein label chain B · ligand label chain J · model 1

Original structure and viewer
9Protein-chain contacts within 5 Å
11Protein-chain contacts within 6 Å
7Qualified local alignment positions
0Side-chain incomplete residues in local neighborhood

Identity and provenance

Source evidence
phase6a:site_classification:PDB:7HGF:LIG:J:T0Y:103:.:SITE:UP:Q7Z4V5:PWWP1:B
Original mmCIF SHA-256
c92bb07f522474a41152e29a7aa02fe7dc12373ecb91f8ff02534aa4965e6d2b
Experimental method
'X-RAY DIFFRACTION'
Source site class
deposited_research_ligand · source_observed
Assembly context
asymmetric_unit_multi_chain_possible
Fingerprint
10 qualified aligned contact positions
View original Phase 6C.1 ligand environment

Original experimental coordinates

Load the exact deposited source bytes; the browser verifies the original SHA-256 before drawing. Contacting protein residues and the specified ligand are highlighted only where the local parser can uniquely match source chain and residue identifiers. Otherwise the unmodified deposited structure remains available without an invented interaction highlight.

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Measured residue contacts

The table shows deposited protein-chain residue geometry, including native sequence identifiers. The listed contact atoms are selected under explicit alternate-conformer policy.

Label residueResidueCanonical positionMSA columnMin. heavy-atom distanceContact atoms
50GLU491522.721 ÅOE1 · N05
22TRP21483.421 ÅCE3 · S10
19TYR18453.570 ÅCZ · C06
51THR501533.675 ÅO · C02
16MET15323.679 ÅSD · C13
45PHE441424.075 ÅCD2 · S10
52ALA511544.085 ÅCB · C13
48THR471454.294 ÅCG2 · C09
20PRO19464.914 ÅO · S10
14ALA13305.546 ÅO · S10
76LYSUnmappedUnqualified5.689 ÅO · C09

Local atomic completeness

Label residueTypeCanonicalObserved conformerMissing backboneMissing side chain
16MET15single / commonNoneNone
19TYR18single / commonNoneNone
45PHE44single / commonNoneNone
48THR47single / commonNoneNone
50GLU49single / commonNoneNone
51THR50single / commonNoneNone
52ALA51single / commonNoneNone

Compare experimental site geometry

Further comparisons

All research-ligand observations for this domain · Original structural quality · Chemical classifications and assays