STRUCTURAL BIOLOGY & CHEMICAL EVIDENCEDataset v1.2 · Phase 6D · Comparative experimental recognition environments

Published assay observation

BI-9321 and NSD3

PWWP:ASSAY:0009

cellular interaction response

Reported observation

NanoBRET IC50

= 1.2 µM ± 0.06

Reported uncertainty: SD

Target domain
UP:Q9BZ95:PWWP1
Assay construct
Uncurated–Uncurated
Identity scope
exact single CCD identity

Evidence provenance

Primary source

PMID:31285596

SGC probe developer report: Overview

Verification scope
Phase 3 actual publisher Supplementary Table 7 and official Figure 3/4 captions; selected indexed accepted-manuscript Methods, full PDF unavailable (403); developer identity page
Assay and verification JSON

Field-level provenance

Assay conditions and source verification

Missing information is not proof of absence. The v1.2 source overlay separates not reported in inspected material, not inspected, not transcribed and not applicable.

FieldValue and source stateSource and interpretation
construct boundsnot inspectedSV03B · NanoBRET main Methods

Full primary NanoBRET protocol was not retrieved. Supplementary Table 7 validates the endpoint, value, error and n, but does not provide complete conditions.

Inspected source scope

Selected indexed primary Methods passages inspected; direct PDF and repository page retrieval returned HTTP 403; not a complete full-text review

tagsC-terminal NanoLuc on NSD3-PWWP1; C-terminal HaloTag on histone H3
verified
SV03E · Figure 4e caption

Residue bounds remain unspecified at the inspected caption scope.

Inspected source scope

Actual official publisher figure page retrieved; Figure 4e caption inspected

engineered mutationsnot inspectedSV03B · NanoBRET main Methods

Full primary NanoBRET protocol was not retrieved. Supplementary Table 7 validates the endpoint, value, error and n, but does not provide complete conditions.

Inspected source scope

Selected indexed primary Methods passages inspected; direct PDF and repository page retrieval returned HTTP 403; not a complete full-text review

assay typeNanoBRET IC50
verified
SV03A · Supplementary Table 7, PDF page 11
Inspected source scope

Actual publisher supplement PDF; Table 7 visually inspected on PDF page 11

temperature Cnot inspectedSV03B · NanoBRET main Methods

Full primary NanoBRET protocol was not retrieved. Supplementary Table 7 validates the endpoint, value, error and n, but does not provide complete conditions.

Inspected source scope

Selected indexed primary Methods passages inspected; direct PDF and repository page retrieval returned HTTP 403; not a complete full-text review

buffernot inspectedSV03B · NanoBRET main Methods

Full primary NanoBRET protocol was not retrieved. Supplementary Table 7 validates the endpoint, value, error and n, but does not provide complete conditions.

Inspected source scope

Selected indexed primary Methods passages inspected; direct PDF and repository page retrieval returned HTTP 403; not a complete full-text review

pHnot inspectedSV03B · NanoBRET main Methods

Full primary NanoBRET protocol was not retrieved. Supplementary Table 7 validates the endpoint, value, error and n, but does not provide complete conditions.

Inspected source scope

Selected indexed primary Methods passages inspected; direct PDF and repository page retrieval returned HTTP 403; not a complete full-text review

DMSO percentnot inspectedSV03B · NanoBRET main Methods

Full primary NanoBRET protocol was not retrieved. Supplementary Table 7 validates the endpoint, value, error and n, but does not provide complete conditions.

Inspected source scope

Selected indexed primary Methods passages inspected; direct PDF and repository page retrieval returned HTTP 403; not a complete full-text review

unitsµM
verified
SV03A · Supplementary Table 7, PDF page 11
Inspected source scope

Actual publisher supplement PDF; Table 7 visually inspected on PDF page 11

measurement uncertainty0.06
verified
SV03A · Supplementary Table 7, PDF page 11

Reported mean ± SD; central value unchanged.

Inspected source scope

Actual publisher supplement PDF; Table 7 visually inspected on PDF page 11

uncertainty typeSD
verified
SV03A · Supplementary Table 7, PDF page 11
Inspected source scope

Actual publisher supplement PDF; Table 7 visually inspected on PDF page 11

replicate definition3 independent replicates; mean ± SD
verified
SV03E · Figure 4e caption and SV03A Supplementary Table 7
Inspected source scope

Actual official publisher figure page retrieved; Figure 4e caption inspected

measurement entityPREP:BI-9321
verified
SV03A · Supplementary Table 7, PDF page 11

The reported result belongs to this experimental preparation and construct; structural CCD membership alone cannot transfer affinity.

Inspected source scope

Actual publisher supplement PDF; Table 7 visually inspected on PDF page 11

concentration rangenot inspectedSV03B · NanoBRET main Methods

Full primary NanoBRET protocol was not retrieved. Supplementary Table 7 validates the endpoint, value, error and n, but does not provide complete conditions.

Inspected source scope

Selected indexed primary Methods passages inspected; direct PDF and repository page retrieval returned HTTP 403; not a complete full-text review

incubation and flownot inspectedSV03B · NanoBRET main Methods

Full primary NanoBRET protocol was not retrieved. Supplementary Table 7 validates the endpoint, value, error and n, but does not provide complete conditions.

Inspected source scope

Selected indexed primary Methods passages inspected; direct PDF and repository page retrieval returned HTTP 403; not a complete full-text review

fittingnot inspectedSV03B · NanoBRET main Methods

Full primary NanoBRET protocol was not retrieved. Supplementary Table 7 validates the endpoint, value, error and n, but does not provide complete conditions.

Inspected source scope

Selected indexed primary Methods passages inspected; direct PDF and repository page retrieval returned HTTP 403; not a complete full-text review

negative observationnot applicableSV03A · Supplementary Table 7, PDF page 11
Inspected source scope

Actual publisher supplement PDF; Table 7 visually inspected on PDF page 11

identity assignment{"ccd_id": "EJE", "chemical_id": "INCHIKEY:WOAOENGFAAUUGT-UHFFFAOYSA-N"}
verified
SV03C · Properties and existing CCD mapping
Inspected source scope

Primary developers confirm exact chemical identity, SPR value and U2OS NanoBRET endpoint

Structure → Component → Assay

Exact identity contact links

1 contact links

6G2O EJE

native annotation core contact

same exact chemical identity and native domain; construct equivalence not assumed