{
  "analysis_id": "PWWP-EVO-1.0.0",
  "python": "3.12.14 (main, Aug 25 2026, 14:00:49) [Clang 22.1.3 ]",
  "platform": "Linux-6.18.55-x86_64-with-glibc2.39",
  "biopython": "1.88",
  "software": {
    "MAFFT": "v7.526 (2024/Apr/26)",
    "IQ-TREE": "2.4.0 Linux x86 64-bit built Feb7 2025"
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  "commands": [
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        "AA",
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        "--mset",
        "LG,WAG,JTT,VT",
        "--mrate",
        "E,I,G,I+G",
        "-B",
        "1000",
        "-alrt",
        "1000",
        "-bnni",
        "-T",
        "2",
        "-keep-ident",
        "-seed",
        "20261026",
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        "trees/primary"
      ]
    },
    {
      "analysis": "sensitivity50",
      "argv": [
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        "-s",
        "alignment_occupancy50.fasta",
        "-st",
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        "--mset",
        "LG,WAG,JTT,VT",
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        "-keep-ident",
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      ]
    }
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  "alignment_commands": [
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      "--maxiterate",
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      "--thread",
      "2",
      "domain_sequences.fasta"
    ],
    [
      "mafft",
      "--amino",
      "--genafpair",
      "--maxiterate",
      "1000",
      "--thread",
      "2",
      "domain_sequences.fasta"
    ]
  ],
  "archive_sha256": {
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}